Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3256 ATGGAAAATGACGATGATCACAACGTTATTGTCCTACTTATTGTCGCGGGTTCAGCAATATTTGTTGTTGTCTCAATGTATCGTGTCCTGACCATTTGGTTTTGTCACCACCAAAGCACCACGGCAGATCAAAACCCCCCACAACCACCGCCGTTGGCCGCAACACTGAGCCTCGGCGAAAGTGCATCCTCATCAATAGTACACCTAATTCCAACACACATGTATCATAAGAGAAATAAAGTTGACGTGGTTTCGGATGATGAAGGCGAAAGCGGCACCTGTGCTGTTTGTTTGGGAGATTTTGAGGAGGGTGATGAGTTGAAGACTATGCCGGAGTGCTTGCACTCTTTTCATGTGAATTGTATTGACATGTGGCTCCGTTCGCATTCGAGTTGCCCTATTTGTCGCGCTGGTGCCGGTGCTGCCCCTTTGCCGGCGATGAGTGCAAATCATCGCAGCATAGACATGGTGAGATTTTGA 480 0.4792 MENDDDHNVIVLLIVAGSAIFVVVSMYRVLTIWFCHHQSTTADQNPPQPPPLAATLSLGESASSSIVHLIPTHMYHKRNKVDVVSDDEGESGTCAVCLGDFEEGDELKTMPECLHSFHVNCIDMWLRSHSSCPICRAGAGAAPLPAMSANHRSIDMVRF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3256 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 139 IPR013083 -
Psa2g3256 159 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Psa2g3256 159 SMART ring_2 94 135 IPR001841 -
Psa2g3256 159 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 6 148 - -
Psa2g3256 159 Pfam Ring finger domain 93 136 IPR001841 -
Psa2g3256 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 148 IPR044675 -
Psa2g3256 159 SUPERFAMILY RING/U-box 75 138 - -
Psa2g3256 159 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3256 Psa-Chr2 369632464 369633893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3256 10 137 C3H Transcription Factor Family AT1G04360 32.857 2.11e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3256 - - aprc:113870478 157.147