Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3242 ATGGAGAACTATGAGGTTTTGGAGGAACTTCACAACGTCGAAGCCGAGATAGAAGATGTTCAAGAACAAATTAGGGCGTTAATTGAGAGGCAAGAGAGGTTGTATGAGAGGAAATCTGAGCTGAATTCTATTCTGGAAGCGTGTAAAGAATCTGAAAATGAGGCAAATAATGCAAGTTCAAGTACAGTGGAGAATTGGGATGGGCCATTTGAATGGGATTCTGAAGCAGCTGATCTTAGATTAAACATTTTCGGCATTTCATCTTACCGTGCCAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTAACGGAATTGCTCTAGTCGTCAGTCCTTTGCTTTCGCTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGCATCCCAGCATATATGTTAACTTCAACAACAAGTAAGGAAAATGAGAAGTTCATATACAAAGCTTTGGAAAAGGGCGAGGGGGAACTCAAGATTTTGTATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAGAAGTGCCATCATGCTGGTCGTCTTTCGCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCACGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACACAGTTCCCTAATGTTCCTATGATTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGGTAGAGATGTTGCACATTCGTAGATGTATCAAATTTGTCAGCACAGTCAATAGGCCAAATTTATTTTATATGGTAAAGGAAAAGTCATCTGTCAGTAAGGTGGTTGTTGACGAAATTGCCGAATTCATTCAAGAATCTTATCCAAATCGCGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACTGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCTGCTGGTCATTATCATGCAGATATGGATGTAAATGATCGTGAAAAAGTACACATGCGGTGGAGCAGTAACAGGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGCATGGGAATTAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACGTACTACCAGGAAAGTGGTCGAGCTGGTCGAGACGGGCTTCCTTCTGAATGCCTATTATACTTTAGACCTGGTGATGTTCCCCGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATAGTACGATTTTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCATTACAAGAATGCAATGGGATGTGCGACATTTGTGCATTCTCAAGTGAGGTGAAGGAAGTGGATGTCTCCCGGCATGCAAAATTGATGGTTTCTTTGTTGCAAGATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAAAAAATGAAAACAAAACAGAAGGAAATAGGTTGGTCTGTCCTCTCATCTGTTTTTTATTTGGCTAGATGTATTATTTTTTGCTAA 1623 0.4128 MENYEVLEELHNVEAEIEDVQEQIRALIERQERLYERKSELNSILEACKESENEANNASSSTVENWDGPFEWDSEAADLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMIALTATATQRVQNDLVEMLHIRRCIKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNRESGIVYCFSRKECELVAKELRERGISAGHYHADMDVNDREKVHMRWSSNRLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRFCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSSEVKEVDVSRHAKLMVSLLQDIQASDQRSTMLQLVEKMKTKQKEIGWSVLSSVFYLARCIIFC* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3242 540 Pfam Helicase conserved C-terminal domain 304 406 IPR001650 -
Psa2g3242 540 SMART ultradead3 85 288 IPR014001 -
Psa2g3242 540 Coils Coil 3 37 - -
Psa2g3242 540 Pfam RecQ zinc-binding 419 475 IPR032284 -
Psa2g3242 540 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 505 IPR004589 GO:0004386|GO:0006310
Psa2g3242 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Psa2g3242 540 CDD SF2_C_RecQ 280 416 - -
Psa2g3242 540 Gene3D - 280 476 IPR027417 -
Psa2g3242 540 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Psa2g3242 540 SMART helicmild6 326 407 IPR001650 -
Psa2g3242 540 Gene3D - 11 279 IPR027417 -
Psa2g3242 540 PANTHER DNA HELICASE RECQ FAMILY MEMBER 8 524 - -
Psa2g3242 540 PANTHER ATP-DEPENDENT DNA HELICASE Q1 8 524 - -
Psa2g3242 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Psa2g3242 540 CDD DEXHc_RecQ1 71 279 - -
Psa2g3242 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3242 Psa-Chr2 368560530 368568760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3242 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 19.373 8.49e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3242 K10899 - gmx:100817635 920.228