Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3220 ATGGCCGTGAATCTGACACCAGGTGCGGTAATGAAGATGTGTTTCTCCGCGCCGGAGGATTTTCAACCGGTGCTTCAAGTTATCGATCTAAGACTTGTTCAGTCGTCGCAGACCGCTACTGAGAGATACAGAGCCGTACTATCTGATGGTGCGTATTACGAACAAGGAATGCTCGCTACTCAAAAGAATGATCTGATTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTCTTCAATTCGTTACAAATGATGTTCAGCGTCGCAAGATTATTATCATTGTTGACCTGGAAGTTCTAGTGGACATATGTGAATTGATTGGAAAACCTGTACAAGCGCCAAAAGAATCACCTGCACAATTTCCTGTTATTGAAACAGGAAATGTACAATCAGCTGTAGGAAACACTGCTGGAGATTCACAGACTTTAAATACTAATTCTCATGCAGGCAGCATTAATGTTAGACCTAATATGGCTGTGCCGCCATCAATGGATCGTTCAAAAGTGAATTCTCCTGCTAGTAGTGTTTATTCTAACAATTCTGAATCTGCAAGGTACGGTGCATCTAATGCCCCTCCTTCCTCTTATCCCAAACCTGAGCCTGGAGTCAGTGTGAATCGACCACCACTAGTCAATGGTTCTTATGGTCAGCAGAATGCAAGTTTCCGCAATCCTCAACAACCATTGCACAATTCTAATGCTCGCCCTCCTCAGCCTATGTACAGACAGCCAACTCCATATGCCAATAGAGGTCCTATGGGGAGAAACGATGGTCCTCCAAGGATAATTCCAATATCTGCATTGAATCCATATCAAAATATGTGGACAATTAAAGCTAGAGTAACTGCCAAGGGAGAACTTAGGCTCTATAACAATGCCCGAGGCGAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCTGGAGGGGGAGAAATACGATCGACTTGCTTTAATGCTGTGGCTGATAAGTTCTATAGCCTAATTGAAGTAGGTAAAGTTTATTTGGTTTCTCGGGGAACTTTAAAAGCAGCTCAGAGAAATTTTAATCACCTTCCTAATGATCAAGAGATAACCCTTGACGCCACATCGGATATACTGCCATGCCCCGACGATGATAACTCAATACCACAACAAATATATAATTTCCGTTCCATTGGTGACATTGAGAGTATTGAAAGCAACAGTATTGTGGATGTGATTGCTGTGGTGACTTCTATTAGTCCCACAGCTTCAATCATGAGAAAAAATGGTACTGAAACACAAAAGAGATCTCTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTCACTATATGGGGAAATTTTTGCAACACTGAAGGACAGAGGCTTCAAAGTATCTGTGACTCCGGGGCATTTCCAATTTTAGCTGTAAAATCTGCCAGAGTTAATGATTTCAATGGGAAATCCGTTGGGACCATAGCAACCAGCCAATTAATTGTAGAACCTGAATTTCCAGAGGCTACTACACTGAGAGAATGGTTTGAAAATGAAGGTAGGAATGTCCAAAGTCAATCTATTTCCAGAGATTCATCTTTTGGTAAAAGCGAAGCGCGTAAGACTATATCTCAAATTAAGGACGAAAAGTTAGGGACTTCAGAGAAGCCTGATTGGATAACTGTCTGTGCAAATGTTTCATACATTAAAGTTGATAATTTTTGCTACACAGCTTGTCCTATCATGACAGGAGATAGGCAATGTAACAAAAAGGTTGCCAACAACGGAGATGGGAAATGGCGCTGTGACAAGTGTGACAAGTCCGTTGATGCTTGTGATTATAGGTACTTGCTGCAAATGCAGATACAGGATCACACTGGCCAAACATGGGTAACTGCTTTCCAGGAGGGCGGCGAGGAAATCTTGGGCATATCTGCAAAAGATTTGTATTTTCTGAAATATGAAGAACAAGATGAAGAAAAATTTGCAGAAATTATCCGCAAGGTTGTCTTAACTAGATATGTGTTCAAGCTAAAAGTAAAAGAAGAGATGTACAATGACGAACAACGCGTTAAGTCAACATTAGTAAAAGCAGAGAAGTTAAACTTTGCATCTGATGCTAGATCTCTTCTGGATATGATTGATAAACTTAAGTCTGAAACTGGACTGGGAAGCGTTGAAACTGGACAAGCTGCACCACCAGTATATACTCCTACAAAGAGTTACACTAATACTGGTAGAGATTATGGGTATGGAAACCAACCTGACAGCTCTTTTACTTCATCAGGGGCTCCAAATTCTTACTTGTCATGTAGTAACTGTGGTGTCTCTGGTCATAGCTCTGCACAATGCTTAAACATTAGAAATCAATCTGGCCAGTCTGCTGGAGGGTCCTTCGCCAACAGGGTATCTACTGGATCCGATGGTGCTTCTAGTAATTGCTTTAAATGCAATCAAGCTGGTCATTGGGCAAGAGACTGTCCTGGTGTCACTGTTGCACAAACGGATCAGCGTTCGCAGTTCCCTTCGGCTGGATCAGGCGGTGGTTCTGGTGAGTGCTATAAATGCCATCAAGTAGGACATTGGGCAAGAGACTGTCCTGGTATCATCACTGGAGCCGCTCCATCTCATGGAAACGTCAATGCAGTGCAAGGAAGATATGGCATTGCTCAAAATCAGCAGTACGGGAGATATTAA 2658 0.4206 MAVNLTPGAVMKMCFSAPEDFQPVLQVIDLRLVQSSQTATERYRAVLSDGAYYEQGMLATQKNDLIHSGRLQKGSIVKLLQFVTNDVQRRKIIIIVDLEVLVDICELIGKPVQAPKESPAQFPVIETGNVQSAVGNTAGDSQTLNTNSHAGSINVRPNMAVPPSMDRSKVNSPASSVYSNNSESARYGASNAPPSSYPKPEPGVSVNRPPLVNGSYGQQNASFRNPQQPLHNSNARPPQPMYRQPTPYANRGPMGRNDGPPRIIPISALNPYQNMWTIKARVTAKGELRLYNNARGEGKVFSFDLLDSGGGEIRSTCFNAVADKFYSLIEVGKVYLVSRGTLKAAQRNFNHLPNDQEITLDATSDILPCPDDDNSIPQQIYNFRSIGDIESIESNSIVDVIAVVTSISPTASIMRKNGTETQKRSLQLKDMSGRSVEFTIWGNFCNTEGQRLQSICDSGAFPILAVKSARVNDFNGKSVGTIATSQLIVEPEFPEATTLREWFENEGRNVQSQSISRDSSFGKSEARKTISQIKDEKLGTSEKPDWITVCANVSYIKVDNFCYTACPIMTGDRQCNKKVANNGDGKWRCDKCDKSVDACDYRYLLQMQIQDHTGQTWVTAFQEGGEEILGISAKDLYFLKYEEQDEEKFAEIIRKVVLTRYVFKLKVKEEMYNDEQRVKSTLVKAEKLNFASDARSLLDMIDKLKSETGLGSVETGQAAPPVYTPTKSYTNTGRDYGYGNQPDSSFTSSGAPNSYLSCSNCGVSGHSSAQCLNIRNQSGQSAGGSFANRVSTGSDGASSNCFKCNQAGHWARDCPGVTVAQTDQRSQFPSAGSGGGSGECYKCHQVGHWARDCPGIITGAAPSHGNVNAVQGRYGIAQNQQYGRY* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3220 885 Gene3D - 514 704 IPR012340 -
Psa2g3220 885 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Psa2g3220 885 MobiDBLite consensus disorder prediction 139 202 - -
Psa2g3220 885 SUPERFAMILY Retrovirus zinc finger-like domains 788 817 IPR036875 GO:0003676|GO:0008270
Psa2g3220 885 Gene3D - 833 860 - -
Psa2g3220 885 MobiDBLite consensus disorder prediction 224 243 - -
Psa2g3220 885 CDD RPA1_DBD_B 397 504 - -
Psa2g3220 885 Gene3D - 262 372 IPR012340 -
Psa2g3220 885 ProSiteProfiles Zinc finger CCHC-type profile. 840 854 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 PANTHER REPLICATION FACTOR A 1, RFA1 3 743 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa2g3220 885 CDD RPA1N 8 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Psa2g3220 885 MobiDBLite consensus disorder prediction 168 191 - -
Psa2g3220 885 CDD RPA1_DBD_A 265 367 - -
Psa2g3220 885 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Psa2g3220 885 Pfam OB-fold nucleic acid binding domain 276 363 IPR004365 GO:0003676
Psa2g3220 885 SMART c2hcfinal6 757 773 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 SMART c2hcfinal6 839 855 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 SMART c2hcfinal6 800 816 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 SUPERFAMILY Retrovirus zinc finger-like domains 826 858 IPR036875 GO:0003676|GO:0008270
Psa2g3220 885 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Psa2g3220 885 SUPERFAMILY Nucleic acid-binding proteins 381 511 IPR012340 -
Psa2g3220 885 MobiDBLite consensus disorder prediction 224 239 - -
Psa2g3220 885 Pfam Replication protein A OB domain 386 489 IPR031657 -
Psa2g3220 885 Gene3D - 3 114 IPR012340 -
Psa2g3220 885 SUPERFAMILY Nucleic acid-binding proteins 262 376 IPR012340 -
Psa2g3220 885 Gene3D - 753 832 - -
Psa2g3220 885 Pfam Zinc knuckle 800 815 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 Pfam Zinc knuckle 839 854 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 PANTHER REPLICATION PROTEIN A SUBUNIT 3 743 - -
Psa2g3220 885 Gene3D - 375 513 IPR012340 -
Psa2g3220 885 ProSiteProfiles Zinc finger CCHC-type profile. 801 815 IPR001878 GO:0003676|GO:0008270
Psa2g3220 885 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 224 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa2g3220 885 CDD RPA1_DBD_C 530 703 IPR013955 -
Psa2g3220 885 MobiDBLite consensus disorder prediction 139 154 - -
Psa2g3220 885 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3220 Psa-Chr2 367953395 367957559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3220 1 787 Core DNA Replication Machinery Family AT5G45400 49.708 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3220 K07466 - gmx:100778597 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3220 2 367953395 367957559 Psa2g3220 2 367953395 367957559 ECH