Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3161 ATGGGTTACGAAGACAATCCGTATCGTGATGAGGATGGCGAACCGTTGATGGACTACGACGATGTGCAATCTGACGGAGAAGCGACACCGGAGCCGCAACAGCTTGACGATTTTGAGGAGGAAGACGTTGACGACTGGCGTGGTCGAGAGAGGTCACAAACGCCGGTGCATGACACCGATTCGTCGAAATCGAAGCCGAGGAAGAGGCTGATTAAAAAGAGCGACACCGGGAAACAGTCGGGGAAACTTTCGGTTGCACCGGAACTCGAAGATGAGTTGGAGGAGGACGGTTACCGGGGGATGGCTGATGAGGAAGAAGGGAGGAAGAGGAAGAAAGGGAAGGATAGTGGATCTGGGAAGAAGGAAAAGAGGCTGAAAGGGGGGGAAAAGAGGTATGGTGAAAGTAGCGGTGCAAAGAGTGGGTCTAGATTTGGGGGTTCCAAGAAAGCGTTTGGTGGTAAGGCTGGGAATGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGAGGGGATTCTGAGGATGATCACGAGGGTAACAGGAATATGGATGATGACAACTTTATAGATGATACTGGAGTAGAACCTGCTTTATATGGTTATGATGAACCACGGTCTCCTGGTGATGCTCCTCAGGCAGAGGAAGGTGAGGAGGATGATGAAGTTAAGGATCTTTTCAAAGTGGGTAGGAAGAAGAAGAAGAATGAGAGGAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTCATGGCTGAGCTTGAGATTACAGCTGAAGAGGATGCTGAACTTAATAGACAGTTTAAGCCTGCTATTAATAAACTCAAGAAGTTGCCTCTTCTCCAAGAAGTCCTCTCGAAGAAACAGCTTCAACTTGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCCGATGGAAGTCTGCCAAATATTAACATAAGGACAGCAATTTTGAAGATTTTGAATGATTTTCCCATAGACCTAGAGCAGTTTGATAGAAGAGAACAGCTGAAGAGGAGCGGTCTTGGAAAGGTGATTATGTTTTTATCAAGGTCCGATGAAGAAATCAATGTAAATAGGAAATTAGCCAAAGATTTGGTTGATAAATGGAGCCGGCCTATTTTTAACAAGAGTACTCGGTTTGAAGACATGCGTAATGTTGAGGATGATAGGGCTCCATACAGGAGGCCATCTGTTAAAAAGCCAGCAAATAAAGCTGCAGGGATGGAATCTAGAGATGGCGATCTTGATTTGGATCTTTCACAGCCTAGGGCTGGACAGTCGTCTTCCAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTTATCCGCCCCCAATCTAAAATTGACCCTGATGAAATTAGAGCACGTGCAAAACAAGGTTCACAAGACCAGCATCGAATGAAGATGAATAAGAAATTGCAGCAGTTGAGGGCACCAAAAAAGAAGCAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGGTCAAATACTTCTAA 1539 0.4522 MGYEDNPYRDEDGEPLMDYDDVQSDGEATPEPQQLDDFEEEDVDDWRGRERSQTPVHDTDSSKSKPRKRLIKKSDTGKQSGKLSVAPELEDELEEDGYRGMADEEEGRKRKKGKDSGSGKKEKRLKGGEKRYGESSGAKSGSRFGGSKKAFGGKAGNDHDGEVKEMWDTIAGGDSEDDHEGNRNMDDDNFIDDTGVEPALYGYDEPRSPGDAPQAEEGEEDDEVKDLFKVGRKKKKNERSPAEIALLVENVMAELEITAEEDAELNRQFKPAINKLKKLPLLQEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQFDRREQLKRSGLGKVIMFLSRSDEEINVNRKLAKDLVDKWSRPIFNKSTRFEDMRNVEDDRAPYRRPSVKKPANKAAGMESRDGDLDLDLSQPRAGQSSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3161 512 MobiDBLite consensus disorder prediction 44 65 - -
Psa2g3161 512 MobiDBLite consensus disorder prediction 457 482 - -
Psa2g3161 512 Pfam TFIIS helical bundle-like domain 328 382 IPR017923 -
Psa2g3161 512 ProSiteProfiles TFIIS N-terminal domain profile. 302 385 IPR017923 -
Psa2g3161 512 MobiDBLite consensus disorder prediction 153 190 - -
Psa2g3161 512 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 241 388 IPR035441 -
Psa2g3161 512 MobiDBLite consensus disorder prediction 101 133 - -
Psa2g3161 512 MobiDBLite consensus disorder prediction 430 444 - -
Psa2g3161 512 Coils Coil 248 268 - -
Psa2g3161 512 PANTHER PROTEIN IWS1 HOMOLOG 1 1 511 - -
Psa2g3161 512 MobiDBLite consensus disorder prediction 396 498 - -
Psa2g3161 512 PANTHER PROTEIN IWS1 HOMOLOG 1 1 511 IPR044204 GO:0009742|GO:0032784
Psa2g3161 512 MobiDBLite consensus disorder prediction 1 194 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Psa2g3161 Med26 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3161 K17498 - gmx:100801805 813.142