Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3158 ATGGGTCGGAAGAACGGCGCCGTTTTAGCCAGCGAACCAGTCGCCGAACAACAAACTCATGATAACAGCACCACCCAACTCGAATCCTCGAAGAAGAAGAACAAAAAGAACAAACACAAACTCCAAAACGAAGAAAACACCCCCAAAAGAAAGCACGAAGAACTAAACCCTCAAAACGACACCGAATCCGAGAAGAAAAGTAAAAAGAAGAAGAAACACAACAAATCGAAAGACATCGGGGAGGAAAATGGCAGTGGTAATGGCGGTAACGGCGCCGAGACTGTTTCGGCGTCGGATGAACCTATTATGGTTACCGGAAAGAATGCGGGCGATGAGAAATATGCTGCTGTTACAACTTTCGTTGGTTCGGGGCTTCCTGATAACGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCTCGAGCTTGGCCGTTTTTGTTGGACGGTCGTGATTTGATTGGAATTGCAGCCACTGGTTCAGGCAAGACACTTGCGTTTGGGTTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAATAAGGTTTCCTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTTTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGCGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCACAAATCTCTGCACTGAAATCTGGCATTGATATTGTTATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGTCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATTCTTGGTCAGACATGTTCAGTTCGTCAAATGGTTATGTTCAGCGCTACATGGCCGCTAGCAGTTCATCACTTAGCGCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTCTTGGATGAGCGTTTACGTGATAAGCGTCTGCTTGCTTTATTAGAGAAGTACCACAAATCTCAGAAGAATCGAGTATTGGTTTTCGTTTTGTACAAATGGGAAACCACACGAGTTGAAAAAATGCTTCAGCAAGGGGGTTGGAAGGCTGTGTCAATTAGTGGGGACAAATCACAGCATGAGCGCACAAAGGCGCTGTCATTATTCAAGAATGGAACCTGTCCTTTGATGATTGCTACTGATGTGGCTGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTACGTTCATAGAATTGGGCGAACAGGGCGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACAAATCAGAATAAGGGACTTGCTGGAGAGCTTGTAAATGTTTTAAGAGAAGCAGGGCAAGTTGTGCCCGATGATCTTTTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTCGACAACTCTGACGACGAAGACTAA 1617 0.436 MGRKNGAVLASEPVAEQQTHDNSTTQLESSKKKNKKNKHKLQNEENTPKRKHEELNPQNDTESEKKSKKKKKHNKSKDIGEENGSGNGGNGAETVSASDEPIMVTGKNAGDEKYAAVTTFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKNKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGTCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTNQNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3158 538 CDD DEADc 134 326 - -
Psa2g3158 538 MobiDBLite consensus disorder prediction 1 99 - -
Psa2g3158 538 CDD SF2_C_DEAD 339 471 - -
Psa2g3158 538 Pfam DEAD/DEAH box helicase 141 310 IPR011545 GO:0003676|GO:0005524
Psa2g3158 538 PANTHER BNAA08G07020D PROTEIN 27 524 - -
Psa2g3158 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Psa2g3158 538 MobiDBLite consensus disorder prediction 39 67 - -
Psa2g3158 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Psa2g3158 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 325 IPR014001 -
Psa2g3158 538 Coils Coil 27 47 - -
Psa2g3158 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 501 IPR001650 -
Psa2g3158 538 Pfam Helicase conserved C-terminal domain 354 462 IPR001650 -
Psa2g3158 538 Gene3D - 329 504 IPR027417 -
Psa2g3158 538 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 524 - -
Psa2g3158 538 SMART ultradead3 135 342 IPR014001 -
Psa2g3158 538 SMART helicmild6 381 462 IPR001650 -
Psa2g3158 538 Gene3D - 90 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3158 Psa-Chr2 363103479 363108699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3158 117 491 Eukaryotic Initiation Factors Gene Family AT3G19760 32.095 1.98e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3158 K14811 - gmx:100806057 820.076