Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3140 ATGGTAGAAGGAGGAAGAATGCGATTATCCGAGGAAGCTAGAAATGGGTTAGAATTTTTGAAACGTAAAAGGCTTCAGCGTGCACAAGCCGCTGCTGCCTCTCAGACTAGTGTTGCTAACATGATGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTTCATGCGGCACAAAATTGCACAGTGCTCCGGATGTCTTTTTCAAACGGAAGGTGGATAAGTTTGATACAAGTGATTTGGAATGGACTGAAAACATTCCAGAGTGTCCTGTTTATTCTCCAACGAAGGAGGAATTTGAAGATCCTTTGATTTACTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAAGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCCCTTCGCCTTGCTGAATGGGACACTGAAGACAAAGTCACCTTTTTTATGAGTGGAAGAAATTATACATTCCGCGATTATGAGAAAATGGCGAACAAGGTTTTTGCACGAAGATATTGCAGCTCTGGATGTCTTCCAGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGACACTGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAATCTTTCCCGTTTGCCCAAATCAACTTTGCGTCTTTTGGAAACTTCAATTCCGGGAGTAACAGAACCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCGTGGCACGTGGAGGATCATTACTTGTACAGCATTAATTATCAGCATTGCGGGGCATCAAAAACATGGTATGGTATCCCTGGTCACGCAGCTTTGGAATTTGAAAGGGTGGTTAGAGAACATGTGTACACTACTGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTTTATTTCCGCCTAATATTTTGTTGGAGCATAAAGTCCCTGTCTATAAAGCTGTTCAAAAGCCAGGAGAGTTCGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGATGATTGGTTTCCTCTTGGGGCTATTGCGAGCCGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCTATGCTTATTCATTCATGCGTGGAATTTGAAGATTCGGACTTTCCTTCCCCAGACTTGATTTCTCCTAATAGAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAGCACTGTGCCAGTTGGTTACTAATGAAATCAAGGGCGTGTACTAGTGTTTCTTCACATTCGCATGGTACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTACATTGCTTATGTTGACTGCAGCTGTCACATGCATCCTGTGTGCCTACGTCATGATGTTAAATCTCTTGACTTCAGCTGTGGGAACAAGTACACTCTATATTTGAGAGATGATATCGGGGACATGGAAGCTACAGCCAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATGGGCAAGCAATCCAAAAGTGAACAAAATATGTATTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAGTGGATATGAACCATACTGTGAGCTTAAATTTGATTATATGATGGAGTTTTATACAACTCCAGAACAGTCGACAAATAATCAAGAGTGTGACACACAAAGTCAATTTGTATTAGGACATTACTCAGAAAACCATAAACCAGAAGGGTCTGAGGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACATCTTGAGTGTTCCTCTGCTAATAAAGATGCTGAGGTGCAGACTAACTTGAAAGTGGGCATTATTGATTGCAAAGAACTTGGTGAAACAATATCCAACAATGCATGCGGATCTTCACTATTCCCTGCTCGGTATGAAAGCTCGGTTAAAGTGCATGATCTTCAGAAACCTGATGTGAAGCCTATAGTGGATAATGACAGCGATGATTCTGATTCAGGAATATTTAGGGTAAAACGCCCTGCCTCTCTAAAAGCAGAGAAAAGAAATTTGAAGGTTGTGACTGCGAAACATTCTGAGCAGCAGGGACTTAAACGCTTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAACCGGCAACAAATGAATGTCAGAACCAGTGAATCAAGTTATAAATATAACCCAGTTAGTCGTAAAGTTGATATTGGAATTTCCTCCAAGGACAGATTTGCAAGGGGAAATGACACTCCCCTTCCTGTTAGATATAAAAAGTCAGGCAATGAGGAAGTAAGTATGCATATGCAACAAAATCACCACCGGAGAGAGAAGTTTCAGCAAACTTATAGAGAAGCGCCATCCATTGAGATTGGGTCTAAGCGACTTAAAGTCCGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGGTTGAATTGA 2568 0.4136 MVEGGRMRLSEEARNGLEFLKRKRLQRAQAAAASQTSVANMMNRSGGDALRASASCGTKLHSAPDVFFKRKVDKFDTSDLEWTENIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSSGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKNLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALDDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSCVEFEDSDFPSPDLISPNRTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVDCSCHMHPVCLRHDVKSLDFSCGNKYTLYLRDDIGDMEATAKMFEQEDGILDEMGKQSKSEQNMYSYPLSDMFQRAEASGYEPYCELKFDYMMEFYTTPEQSTNNQECDTQSQFVLGHYSENHKPEGSEVSFSAASTLCSLSEHLECSSANKDAEVQTNLKVGIIDCKELGETISNNACGSSLFPARYESSVKVHDLQKPDVKPIVDNDSDDSDSGIFRVKRPASLKAEKRNLKVVTAKHSEQQGLKRLKKVLPEGKSNRQQMNVRTSESSYKYNPVSRKVDIGISSKDRFARGNDTPLPVRYKKSGNEEVSMHMQQNHHRREKFQQTYREAPSIEIGSKRLKVRGPSFLGLESRLN* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3140 855 Pfam jmjN domain 90 122 IPR003349 -
Psa2g3140 855 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Psa2g3140 855 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Psa2g3140 855 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 49 851 - -
Psa2g3140 855 SMART JmjN_1 88 129 IPR003349 -
Psa2g3140 855 Gene3D Cupin 89 437 - -
Psa2g3140 855 PANTHER LYSINE-SPECIFIC DEMETHYLASE 49 851 - -
Psa2g3140 855 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Psa2g3140 855 SMART cupin_9 236 406 IPR003347 -
Psa2g3140 855 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Psa2g3140 855 SUPERFAMILY Clavaminate synthase-like 167 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3140 Psa-Chr2 361396513 361404721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3140 57 425 JUMONJI Transcription Factor Family AT2G34880 35.748 1.01e-61 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa2g3140 JmjC 2.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3140 - - gmx:100798611 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3140 2 361396513 361404721 Psa2g3140 2 361396513 361404721 ECH