Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3135 ATGTTTGGTGATTGTCAAGTTATGTCAACAATGGGAGGAGGAAATGTAGTAACAAACTCAGAATCTCTCTTCTCTTCTCCGATCCACAACCCTAACTTCAACTTCATGCCAAACATGCCTTTTCAACCTTTTTCTTCCTCCATGAAAGAAGAAGATGGAATGTTGAGAGGGAAGGAAGAGATAATGGATCAAAGTGGTTCAGGTAGTGAACAAGTTGAAGACAAGTCAGGAAATGAACAAGAGATCAACAATGAAGAACAACAACAAGCTGCAAAGAAGAAACGTTATCATAGACACACTGTTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGAATGAAACTAAGCCATGATTTAGGACTGAAACCACGCCAGGTTAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAAGGTTTGAAGAATGAGAACTATAGGTTACAAGCTGCTTTACGTAATATTATCTGTCCTAACTGTGGTGGGCCATGTATAATGGGCCCTGATTTGGGCCTTGATGACCATCAACTTCGAATTGAAAATGCTCGTTTAAGAGAAGAGCTAGAACGTGTTTGTTGTATAACATCAAGATACACTGGTCGTTCACTCCAAACAATGGCACCACCTTCATCTCTTATGCAACCGTCACTAGATTTGGACATGAACATTTATCCAACAAGACACTTTGTTGATCAAATTTCACCATGCACAGAAATGATTCCTGTCCCTATGTTACAGTCTGAATCTTCACATTTTCAAGAGGGTGGTCTTTTATTAATGGAAGATGAGAAATCACTTGCTATGGAGCTTGCAGTTTCTTCTATGACTGAGCTTGTTAAGATGTGTCAAATGAATGAACCTCTTTGGATTCGGAATGGCGAGAATGAAAGGGAAGTGCTTAATTTTGATGAGCATGCTAGGATTTTTCAATGGCCTTTGAATCTTAAGCAGAGAAGTGAGTTGAGGACAGAAGCTACACGCGATAGTGCTGTTGTTATTATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAGTTGTTTCCAACAATAGTTGCTAGAGCAAGAACTGTCCAAATTATAGCTTCTGGTGATTCTGGTCATGCAAATGGGACTCTTCAGCTGATGCATGCAGAATTTCAAGTTCTTTCTCCATTGGTGTCCACTAGAGAGACTCATTTTCTTCGATACTGTCAGCAAAATGCGGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAGCTTTCACCAAAACTTTCATCATTCATATCCGAAATACTGCAGAAGGTCTTCTGGCTGTGTGATTCAAGACATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAAGTTATAGAGAAACCTGTTCATCAAATATTCAGTAACTATGTGTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTTGCGAGTCAAATGGCTAGAAACATATCTGATCTTGGAGTGATACCTTCTCCGGAGGCGCGCAAGAACTTGATGAAACTAGCTAACAGGATGATAAAAACTTTTAGTCTTAACATGACTACTTGTGGTGGTCAATCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCTAATGGCGTGATTCTCGCCGCTGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAGGTCTTTGATCTTCTCCGAGACGAACGCCACAGATCTCAGATGGATGCTCTTTCTAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGTTCACATCCAGGAAACTGCATTTCGCTTCTTCGCATAAATGTAGCAAGTAACTCATCACAGAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGATCAATCAGGAAGCTTAGTAGTCTACACCACAATCGATGTCGATTCAATCCAGCTAGCCATGAGTGGTGAAGACCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATACTGACACATCAAGTCTTGGTGGAAACTCATCTGATCAAGGAACACCATCATCAACTACTACTACTAATGCTGCTGCTGCTGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCACCTCTGCAACACCCTGCACCAAATTGAAAGTGCTCTTTGTAGCACCACTAACATCAATTGCTTTGTTGGGTCTTGCAATGAACCAACCACTAGTGCACCTCCCAAGTAG 2445 0.4115 MFGDCQVMSTMGGGNVVTNSESLFSSPIHNPNFNFMPNMPFQPFSSSMKEEDGMLRGKEEIMDQSGSGSEQVEDKSGNEQEINNEEQQQAAKKKRYHRHTVRQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENEGLKNENYRLQAALRNIICPNCGGPCIMGPDLGLDDHQLRIENARLREELERVCCITSRYTGRSLQTMAPPSSLMQPSLDLDMNIYPTRHFVDQISPCTEMIPVPMLQSESSHFQEGGLLLMEDEKSLAMELAVSSMTELVKMCQMNEPLWIRNGENEREVLNFDEHARIFQWPLNLKQRSELRTEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGDSGHANGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHHSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVIEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASQMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMVSSNTDTSSLGGNSSDQGTPSSTTTTNAAAAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIESALCSTTNINCFVGSCNEPTTSAPPK* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3135 814 Gene3D - 323 502 IPR023393 -
Psa2g3135 814 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Psa2g3135 814 MobiDBLite consensus disorder prediction 720 739 - -
Psa2g3135 814 ProSiteProfiles START domain profile. 285 522 IPR002913 GO:0008289
Psa2g3135 814 PANTHER - 73 799 - -
Psa2g3135 814 SMART HOX_1 91 154 IPR001356 GO:0003677
Psa2g3135 814 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 799 IPR042160 -
Psa2g3135 814 Pfam Homeodomain 93 148 IPR001356 GO:0003677
Psa2g3135 814 Gene3D - 77 160 - -
Psa2g3135 814 MobiDBLite consensus disorder prediction 74 92 - -
Psa2g3135 814 SMART START_1 294 519 IPR002913 GO:0008289
Psa2g3135 814 Pfam START domain 295 519 IPR002913 GO:0008289
Psa2g3135 814 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Psa2g3135 814 CDD homeodomain 93 151 IPR001356 GO:0003677
Psa2g3135 814 SUPERFAMILY Homeodomain-like 86 151 IPR009057 -
Psa2g3135 814 SUPERFAMILY Bet v1-like 287 521 - -
Psa2g3135 814 CDD START_ArGLABRA2_like 289 518 - -
Psa2g3135 814 MobiDBLite consensus disorder prediction 61 99 - -
Psa2g3135 814 SUPERFAMILY Bet v1-like 547 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3135 Psa-Chr2 359978955 359984323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3135 8 794 Homeobox Transcription Factor Family AT5G46880 56.243 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa2g3135 START 2.3e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3135 - - cam:101514650 1433.7