Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3124 ATGGATGGAGCCAGCGGCGTCACTGGCGGCGGTGAAGGCTCTGCCCAATTACCGGCGCCGACACCGATGCAAAACTCTAACTCGCCGCCTCCCTTTTTGAGCAAGACGTATGACATGGTTGACGACCCTTCCACTGACGCGATTGTTTCATGGAGCGCAACGAACAACAGTTTTGTCGTTTGGGACCCACCGGAATTCGCTCGGGACCTTTTGCCCAAGTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGACAGTTGAATACATATGGTTTCAGGAAGGTCGACCCAGATCGCTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAACACTTGCTTAAGAGTATAACTCGACGGAAACCTGCCCATGGCAATAATCATCAACCAGCTCAGCAACCACCTGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTCGGGAAATTTGGGCTTGAGGAAGAGGTTGAGCGGCTGAAAAGAGACAAGAATGTTCTGATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACTGATAACCAGCTGCAAACAATGGTTCAGCGCCTTCAAGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAGAGTCCTGGCTTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTAGGCTCAAACAGGAAGGTATTGCTGAAACAACAGAGCGAGCTGCCCCTTCTGATGGACAAATTATTAAATATCAGCCTCAGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCTCGTGTAGAATCTTTCAATAAAAATCCTGATAATTACTTGATTGGTGACGGTACATCCCCATCCAATGCAATGGACAGTAGTAGCTCTTCAAACTGGAATTCCGGAGTAACTCTTCAAGAAGTTCCTCCATCTTCAGTGCAGTCTTCTCACATTCCAGCTGCAACAGGAGCTCAAGGACACATACCTTCTCCAGATGTACCTCAAGCTGCAGCATCTGAAAATGTTATGTTGGATGGAGCACATACAGTACCGACTATCCCGAATTCTCAAGCAGATGTTATCATGCCTGATATACCTTCAATACCAGAGACTGTGCCAAGAAGTATTCTCGATATTCCGGAAGACAATTATATGGCTCCTGAGACAGATGATGGATTTATGGATCCAACTTCACTCGGGTCATTTCCCATTGATTTTGAAGCTCTTTCACCCGGTGCAGACATTGATGATTTGTTAAACAATCCTTCTATTTGGGAGGATCTTTTGCAAACTCCCCTTCCAGAGGATCTTGAGACCAGCGTTGACGAAATATCCAGAGGAAATGAGCCGCAGCCACCAGAAAATGGATGGGAAAATACTCAACACCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGAGGTCAAAAGAATATAA 1488 0.4556 MDGASGVTGGGEGSAQLPAPTPMQNSNSPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPAHGNNHQPAQQPPGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQEGIAETTERAAPSDGQIIKYQPQMNETAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSNAMDSSSSSNWNSGVTLQEVPPSSVQSSHIPAATGAQGHIPSPDVPQAAASENVMLDGAHTVPTIPNSQADVIMPDIPSIPETVPRSILDIPEDNYMAPETDDGFMDPTSLGSFPIDFEALSPGADIDDLLNNPSIWEDLLQTPLPEDLETSVDEISRGNEPQPPENGWENTQHLDQLTEQMGLLSSEVKRI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3124 495 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 481 - -
Psa2g3124 495 Pfam HSF-type DNA-binding 32 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3124 495 SUPERFAMILY "Winged helix" DNA-binding domain 27 121 IPR036390 -
Psa2g3124 495 SMART hsfneu3 28 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3124 495 MobiDBLite consensus disorder prediction 124 141 - -
Psa2g3124 495 MobiDBLite consensus disorder prediction 1 31 - -
Psa2g3124 495 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3124 495 Coils Coil 150 177 - -
Psa2g3124 495 MobiDBLite consensus disorder prediction 122 141 - -
Psa2g3124 495 Gene3D - 24 122 IPR036388 -
Psa2g3124 495 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 481 IPR027725 -
Psa2g3124 495 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3124 495 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa2g3124 495 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3124 Psa-Chr2 357740324 357744759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3124 9 492 HSF AT1G32330 54.617 7.95e-169 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa2g3124 HSF_DNA-bind 2.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3124 K09419 - gmx:100794897 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3124 2 357740324 357744759 Psa2g3124 2 357740324 357744759 ECH