Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3118 ATGAATGGGAGGCACCACCGCCAACAAATTTCCGCCACCGCAAAGCCGCAACAACGACACCGTGCCAAATCGAATTTCCGCTACGTCGAAAAATCCGAACTTAGTTCTTCATCCAACTCTATGGCGGTTGAAGAACGAGTTTCCCCTGAAGATGTTGATGTCAACGGCAATAACAGCAACAATAACAATGCTGCCGATGACGTGGCTAGTTCAAGCACGGCCAAAGAAGGTGGTGACGATGATGATATTGATCTTATTATCGATAACAGGCTTGATAAGTTGCTAAGTGATGTTCAAGAACCTGAATTGTCCATTGAAGAGATCGCGAACAATGATCAATTGCAGCAAGATGAGTTACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAGCCTTGATACATGGAAAGGCTTGCGTTGTTTTCAGATACATATAAACATTGATATTTTGGATGAAATAGGCATTACTGCTAAGGTGAACTCTGATAGTGAAGTTGAAAGTATAAGCGGCAATTCAGATGATTTCTTATACTCTTTCAAAGTTAAATATCTTCCACCGATTGTTTTGACGTGTTTATTACCTAAGTCATATCCGAGCCACCAATCACCTATATTTACAATCTCTGTGAAGTGGTTAGAATCTGCCAAGATTTTAAGTTTATGTTCCAAGTTGGATTCAATATGGACAGAACAGCAAGGGCAGGAAGTAATTTACCAGTGGGTAGACTGGTTACATAGTTCTTCTCTTTCACATTTGGGATTCGATCAGGAGATTAGACTAGGTCCTTATGGCCTGAATTGTGTCGCGGACTCACGTGTGGTTTCGGGAATTGGATGCATTGATAATGATATTCCTTTTTTACAAAGCTACAATAATGAGAGACGCCATCAGAACTTCCTTAAAGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAATTCGTCCAATTACCATGTAAACATTTTTTTTGCCGCAAATGCGTGAGGACCTTTACCCAAATTCACGTAAAAGAAGGCAACATTAGTAATCTTCAATGTCTGGATGCAAAATGCAAGGACATGATTCCACCTAGCCTTTTAAAACATTTTCTTGGCGACGAAGATTACGAACGTTGGGAATCGGTGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCGAGATGCGAAACACCCTGCATAGAGGATGAAGACCAACATGCTCAGTGCCCAAACTGCTTTTTTAGCTTTTGTACTCTTTGCAGGGAACGACGCCATGTTGGCATAGAATGCTTGACACTAGATTTGAAGCTTCAACTTCTGCAGGATCGTCAAAATTCATCCCAATTAAAGGGAAATCAAAGGCGTCTTGAACTTGAAAAGATCAATGAAATGCTCAGTGAGAGAGAAATTCGCCGTGATTCCAAGTTTTGCCCATCTTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGTGGTAATTGTGAACAATACTTCTGCTACCGCTGCAACCAAGCACTTGATGCATCAGATCCATATGGACATTTCAGGGATGGGTCGTGTGAACTTTTCCCACGAGAAATGATTGATAACTGGCAAGCACAAGCACGCATAAATCCTCTCCAGGAAATACAACAAGTACATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATTGGAAACAATAATCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACGGAATTGTCCGGCGCGGCACTAAGCATTATGGACCGAAAGGTTGCAAACAGCACAGTGAGGGATAG 1851 0.4122 MNGRHHRQQISATAKPQQRHRAKSNFRYVEKSELSSSSNSMAVEERVSPEDVDVNGNNSNNNNAADDVASSSTAKEGGDDDDIDLIIDNRLDKLLSDVQEPELSIEEIANNDQLQQDELLVVESIYGENVFSLDTWKGLRCFQIHINIDILDEIGITAKVNSDSEVESISGNSDDFLYSFKVKYLPPIVLTCLLPKSYPSHQSPIFTISVKWLESAKILSLCSKLDSIWTEQQGQEVIYQWVDWLHSSSLSHLGFDQEIRLGPYGLNCVADSRVVSGIGCIDNDIPFLQSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCVRTFTQIHVKEGNISNLQCLDAKCKDMIPPSLLKHFLGDEDYERWESVMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPNCFFSFCTLCRERRHVGIECLTLDLKLQLLQDRQNSSQLKGNQRRLELEKINEMLSEREIRRDSKFCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNQALDASDPYGHFRDGSCELFPREMIDNWQAQARINPLQEIQQVHAELFHLGGSACPSCRQFNVKIGNNNHMLCWACQSHYCYLCNGIVRRGTKHYGPKGCKQHSEG* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3118 616 SUPERFAMILY RING/U-box 302 386 - -
Psa2g3118 616 SUPERFAMILY RING/U-box 375 437 - -
Psa2g3118 616 SMART ibrneu5 375 433 IPR002867 -
Psa2g3118 616 SMART ibrneu5 462 527 IPR002867 -
Psa2g3118 616 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Psa2g3118 616 SUPERFAMILY RING/U-box 552 613 - -
Psa2g3118 616 MobiDBLite consensus disorder prediction 1 80 - -
Psa2g3118 616 Gene3D Ubiquitin Conjugating Enzyme 103 254 IPR016135 -
Psa2g3118 616 MobiDBLite consensus disorder prediction 29 44 - -
Psa2g3118 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Psa2g3118 616 ProSiteProfiles RWD domain profile. 117 252 IPR006575 GO:0005515
Psa2g3118 616 MobiDBLite consensus disorder prediction 1 19 - -
Psa2g3118 616 SUPERFAMILY UBC-like 113 256 IPR016135 -
Psa2g3118 616 ProSiteProfiles Zinc finger RING-type profile. 307 351 IPR001841 -
Psa2g3118 616 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 84 555 IPR031127 GO:0004842|GO:0016567
Psa2g3118 616 SMART RWD2001b 117 252 IPR006575 GO:0005515
Psa2g3118 616 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 84 555 - -
Psa2g3118 616 SUPERFAMILY RING/U-box 467 522 - -
Psa2g3118 616 Pfam RWD domain 113 247 IPR006575 GO:0005515
Psa2g3118 616 ProSiteProfiles TRIAD supradomain profile. 303 533 IPR044066 -
Psa2g3118 616 SMART ring_2 395 483 IPR001841 -
Psa2g3118 616 SMART ring_2 565 594 IPR001841 -
Psa2g3118 616 SMART ring_2 307 354 IPR001841 -
Psa2g3118 616 MobiDBLite consensus disorder prediction 52 70 - -
Psa2g3118 616 Pfam IBR domain, a half RING-finger domain 463 512 IPR002867 -
Psa2g3118 616 Pfam IBR domain, a half RING-finger domain 375 433 IPR002867 -
Psa2g3118 616 Gene3D - 446 559 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3118 302 543 ARIADNE family AT3G27710 23.695 1.42e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3118 K11971 - gmx:100500662 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3118 2 357616866 357621846 Psa2g3118 2 357616866 357621846 ECH