Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3113 ATGCATTACATAAGCCGATTCATAGCTGGATTTACAATCGGCTTTGTAAGAGTATGGCAGATTAGTTTAGTGACACTTTCGATTGTTCCCTTAATTGCACTTGCTGGAGGTCTTTATGCGTATGTCACAATTGGCCTCATTGCAAAAGTTAGAAAAGCGTATGTTAGAGCTGGTGAAATTGCACAAGAGGTGATAGGAAATGTTAGAACTGTACAAGCTTTTGCAGGAGAAGAAAGAGCGGTGAAATCTTATAAAGCAGCTCTTATGAAAACTTATGTAAATGGTAGAAAAGCTGGTTTGGCAAAAGGTCTTGGACTTGGTTCAATGCATTGTGTTCTTTTTCTATCTTGGTCTTTGCTTGTTTGGTTCACTAGTATTGTTGTTCACAAGAATATCGCCAATGGCGGCGAGTCTTTTACTACCATGCTTAACGTCGTTATCTCCGGCCTGTCACTTGGGCAGGCTGCGCCGGACATTTCAGCGTTTATTCGAGCTAAGGCGGCTGCTTATCCGATTTTTAAGATGATAGAGAGGGATACAATGAGCAAACAAAGCTCGAAAACTGGTCGAAAATTAAACAAAGTGGAGGGACATATCCAGTTTAAGAATGTTTGTTTCAGCTATCCGTCTCGTCCGGATGTAGCGATCTTCAACAACTTCAATCTCAACATTCCTGCAGGGAAAATTGTTGCACTTGTAGGAGGAAGTGGTTCGGGAAAGAGTACTGTTGTATCGTTGATCGAACGATTTTACGAACCTCTTTCTGGTCATATACTTTTAGACAAGAGTGAAATCAGAGAGCTTGATCTCAAGTGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCAACAAGCATCAAGGAGAATATTTTGTATGGAAAAGATGATGCTACTCTTGAAGAACTAAAACGCGCCGTGAAGCTTTCAGATGCTCAATCTTTCATCAACAATCTTCCTGAAAGATTAGACACTCGGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAAAAGCAAAGGATTGCGATATCTCGTGCCATTGTAAAGAATCCATCTATCCTTTTACTAGATGAAGCAACTAGTGCTCTTGATGCTGAGTCTGAGAAAAGTGTACAAGAGGCTCTCGATCGTGTCATGGTTGGAAGAACAACCATTGTAGTTGCACACAGACTTTCTACTATTAGGAATGCAGATGTTATAGCTGTTGTACAAGGAGGGAAAATTGTGGAGACTGGTAACCATGAAGAACTCATGTCCAACCCAGCTAGTGTTTATGCATCTCTTGTTCAACTCCAAGGTGCATCTTCTTTGCAAGGGCTTCCCGCGGTTGGTCCTAGCTTAGGACGCCAATCAAGCACGGGCTACTCAAAAGAATTTTCGCGTGCAACAACAAGCATTGGGGGTAGTTTTCGATCGGACAAAGACTCGATTGGCAATGTCGGTGGTGATGATGGAAGCAAGTCTAAGCATGTTTCAGCAAAAAGGCTATATTCTATGGTTGGTCCTGACTGGCCTTATGGAGTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATCTCTCATGCTCTTGTTTCGTATTATATGGATTGGGATACAACGCGTCACGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGGTGCAGTTATAACCGTCATAGTCCATGCCATCGAACATCTCTTTTTCGGTATCATGGGCGAGCGACTTACTCTTCGTGTGCGAGAAAAGATGTTTAGCGCTATTTTGAAGAATGAAATTGGATGGTTTGATGAAACAGGCAACACAAGCTCTATGCTTTCATCGCGTTTAGAATCTGACGCAACTTTAATGCGAACAATAGTTGTTGATCGCTCAACGATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCCTATTGAACTGGAGAATCACACTTGTTGTCTTGGCCACATATCCTTTGATAGTTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGTGAAGCCGTGAGCAATATACGCACTGTCGCCGCATTTTGCTCTGAAGAAAAGGTCCTTGATCTTTATGCTAACGAGCTCGTCGGTCCTTCCAAAAATTCATTTCGACGCGGTCAAATTGCCGGCATATTTTATGGCATTTCCCAATTCTTCATCTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCAGTTTTGATGGGAAAGGAGCTAGCTAGCTTTAAATCAGTCATGAAGTCATTTATGGTTTTGATTGTAACAGCACTGGCTATGGGGGAAACTTTGGCATTAGCACCAGATCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTTGAAGTAATGGATAGAAAATCAGAAATAAGAGGTGATATTGGAGAAGAGTTAAGGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGACCAGATGTGATTATTTTCAAGGATTTCAATCTAAGAGTTCCTTCTGGAAAAAGTGTTGCTTTAGTGGGACAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCTATTATACTCAGATTTTATGATCCAACTTCAGGAAAGGTGTTAATTGATGGTAAAGACATCACAAGAATCAATCTAAAATCTCTAAGAAAACACATTGGTCTAGTGCAACAAGAACCAGCCCTTTTCGCCACATCAATTTATGAAAACATTCTCTATGGAAAAGAAGGTGCATCTGATTCAGAAGTAATTGAAGCAGCTAAGCTAGCAAATGCTCATAACTTCATAAGTGGACTTCCAGAAGGTTACTCAACCAAAGTAGGTGAAAGAGGTGTTCAACTTTCTGGTGGGCAGAGACAAAGAGTAGCCATTGCTAGAGCTGTTCTAAAGAATCCTGAAATCTTGCTACTTGATGAAGCAACCAGTGCACTCGACGTTGAATCCGAGCGAATAGTGCAACAAGCTCTCGACAGATTAATGCAAAACAGAACAACTGTTATGGTGGCACATAGATTGTCCACAATAAGAAATGCAGATCAAATCTCAGTTTTGCAAGATGGGAAGATTATTGAGCAAGGGACACATTCAAGTCTTATAGAGAATAAATATGGACCATATTATAAATTAGTCAATCTTCAACAGCAACAGCATCATCAATCATAA 3234 0.4079 MHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAQEVIGNVRTVQAFAGEERAVKSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFKMIERDTMSKQSSKTGRKLNKVEGHIQFKNVCFSYPSRPDVAIFNNFNLNIPAGKIVALVGGSGSGKSTVVSLIERFYEPLSGHILLDKSEIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLDTRVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPASVYASLVQLQGASSLQGLPAVGPSLGRQSSTGYSKEFSRATTSIGGSFRSDKDSIGNVGGDDGSKSKHVSAKRLYSMVGPDWPYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGGAVITVIVHAIEHLFFGIMGERLTLRVREKMFSAILKNEIGWFDETGNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIVSGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVGPSKNSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSEIRGDIGEELRTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPSGKSVALVGQSGSGKSSVISIILRFYDPTSGKVLIDGKDITRINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKYGPYYKLVNLQQQQHHQS* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3113 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 435 IPR003439 GO:0005524
Psa2g3113 1077 Pfam ABC transporter transmembrane region 514 785 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g3113 1077 Pfam ABC transporter transmembrane region 2 147 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g3113 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 513 799 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g3113 1077 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g3113 1077 SUPERFAMILY ABC transporter transmembrane region 494 816 IPR036640 GO:0005524|GO:0016021
Psa2g3113 1077 CDD ABC_MTABC3_MDL1_MDL2 832 1070 - -
Psa2g3113 1077 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524
Psa2g3113 1077 Gene3D - 823 1077 IPR027417 -
Psa2g3113 1077 Pfam ABC transporter 851 999 IPR003439 GO:0005524
Psa2g3113 1077 Pfam ABC transporter 218 366 IPR003439 GO:0005524
Psa2g3113 1077 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 832 1068 IPR003439 GO:0005524
Psa2g3113 1077 Gene3D - 197 463 IPR027417 -
Psa2g3113 1077 CDD ABC_MTABC3_MDL1_MDL2 199 437 - -
Psa2g3113 1077 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 1 1073 - -
Psa2g3113 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 826 1070 IPR027417 -
Psa2g3113 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 437 IPR027417 -
Psa2g3113 1077 SMART AAA_5 226 412 IPR003593 -
Psa2g3113 1077 SMART AAA_5 859 1045 IPR003593 -
Psa2g3113 1077 CDD ABC_6TM_Pgp_ABCB1_D2_like 502 817 - -
Psa2g3113 1077 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 1073 IPR039421 -
Psa2g3113 1077 SUPERFAMILY ABC transporter transmembrane region 4 177 IPR036640 GO:0005524|GO:0016021
Psa2g3113 1077 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 172 - -
Psa2g3113 1077 ProSitePatterns ABC transporters family signature. 971 985 IPR017871 GO:0005524
Psa2g3113 1077 Gene3D ABC transporter type 1, transmembrane domain 2 808 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3113 Psa-Chr2 357193848 357199227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3113 1 1076 Calmodulin-binding Proteins AT2G36910 50.181 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3113 K05658 - gmx:100819045 1877.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3113 2 357193848 357199227 Psa2g3113 2 357193848 357199227 ECH