Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3106 ATGGGTAAAAAGAAGCAGAAGGAGCCGCAACAAACCCCTAAAAACGACACCGTCTCATCCTCTTCCAGTGTTTTCGATGTTCTCTTCGGCAACGCGCCGGAACAGATAACCGGCACTGCCGCTTCTCTTTTTTCCGACGACAACCCCTTTAAGAGAAAGCCTCCACAACCTGCTCTCATTGCTGATGTTACCGATAACACTCCAAATCCCGAAATCTGCGTTGTAGATGAGAAGAAGAGAAAGAGGAACAAAGAGAAAAGCCCCGTGCTTGATTCAAATTCTGCAATCGAAGTTTCTGAGAAGAAGAAAAAGAAGAAAAGTGATATGATGGTTTCAAAGGAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGAAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAACTTTGGTGAAGTTGAATCTGTCAGGATTCGCTCTGTTCCTTTACAAGATACTAAAAAGCCTAGAAAGGGAGCCATCCTTGCGAAGAAGATCAATGAATCAGCTGAAAGTGTTAATGCTTACGTTGTTTTCAAAACTGAGGAATCTGCTCAGGCTTCATTGTCCCACAATATGACTGTGGTTGAAGGAAACCACATTCGTGTTGACAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGATAATTCTCAGCTTTATGATAATAAGAGAACTGTTTTTGTGGGTAACCTCCCATTTGATGTAAAGGATGAAGAACTTTATCAGCTATTTGGTGGTATACCCAATCTAGAATCAAGTGTAGAAGCTATAAGAGTTGTTCGTGATCCTCATCTTAATGTTGGAAAGGGAATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCCAATTCCATTGTTAATAAACGATCCTTGAATCTTCGAGATCGAGCATTGAGACTCAGTCGTGCCAACGCAAATGCTAGTACTACCCCATCTAAAAGGCCACACTCTCCAGCGGCACGACTCAGTCATGGCAAACCAGATGCTACTCCATCTAAAAGGCCATACACTCCAGCAGCACAAGCTCATAGTACCCCTGCAAAGAAGTTTTCAGCTGCTTCAAAGTCTCCTTCAAGCAATAAAAACGGGTCAAACAGAAAAACTACTGCATCTTATCAGGGTCTGCGTGCAACCAAATCTGATGTCCACAAGAAAAGTCATGGTGGAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCAACAGTGGCTGCCAGAAAGGCTAAAGCTAAAGTGCAACAGGAGGGTGGTACACCCAAACAAGCAGGGTCAAAAGGTACCCCAAAACAAGCAGGGTCAAAAGGTACACCAAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGTACTCCTGACAGTTCCGGACGAGTTATGAAAGCTCAAAAGAAGCGGTAG 1425 0.4295 MGKKKQKEPQQTPKNDTVSSSSSVFDVLFGNAPEQITGTAASLFSDDNPFKRKPPQPALIADVTDNTPNPEICVVDEKKRKRNKEKSPVLDSNSAIEVSEKKKKKKSDMMVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKNFGEVESVRIRSVPLQDTKKPRKGAILAKKINESAESVNAYVVFKTEESAQASLSHNMTVVEGNHIRVDRACPPRKKLKGDNSQLYDNKRTVFVGNLPFDVKDEELYQLFGGIPNLESSVEAIRVVRDPHLNVGKGIAYVLFKTKEAANSIVNKRSLNLRDRALRLSRANANASTTPSKRPHSPAARLSHGKPDATPSKRPYTPAAQAHSTPAKKFSAASKSPSSNKNGSNRKTTASYQGLRATKSDVHKKSHGGEKPKERTKKRPTVAARKAKAKVQQEGGTPKQAGSKGTPKQAGSKGTPKQAGSKRKFDSRTPDSSGRVMKAQKKR* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3106 474 MobiDBLite consensus disorder prediction 72 88 - -
Psa2g3106 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 308 IPR000504 GO:0003723
Psa2g3106 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 168 IPR000504 GO:0003723
Psa2g3106 474 Gene3D - 226 323 IPR012677 -
Psa2g3106 474 CDD RRM1_RBM34 124 214 IPR034220 -
Psa2g3106 474 MobiDBLite consensus disorder prediction 358 387 - -
Psa2g3106 474 Gene3D - 70 225 IPR012677 -
Psa2g3106 474 SUPERFAMILY RNA-binding domain, RBD 116 226 IPR035979 GO:0003676
Psa2g3106 474 MobiDBLite consensus disorder prediction 39 104 - -
Psa2g3106 474 CDD RRM2_RBM34 236 312 IPR034221 -
Psa2g3106 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 218 IPR000504 GO:0003723
Psa2g3106 474 SMART rrm1_1 236 312 IPR000504 GO:0003723
Psa2g3106 474 SMART rrm1_1 125 214 IPR000504 GO:0003723
Psa2g3106 474 SUPERFAMILY RNA-binding domain, RBD 229 332 IPR035979 GO:0003676
Psa2g3106 474 MobiDBLite consensus disorder prediction 427 447 - -
Psa2g3106 474 MobiDBLite consensus disorder prediction 389 408 - -
Psa2g3106 474 PANTHER RNA-BINDING PROTEIN 34 45 473 - -
Psa2g3106 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 316 IPR000504 GO:0003723
Psa2g3106 474 MobiDBLite consensus disorder prediction 450 468 - -
Psa2g3106 474 MobiDBLite consensus disorder prediction 1 22 - -
Psa2g3106 474 MobiDBLite consensus disorder prediction 314 474 - -
Psa2g3106 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 473 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3106 126 314 Eukaryotic Initiation Factors Gene Family AT1G22760 28.426 3.53e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3106 K14837 - gmx:100809622 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3106 2 356481596 356486018 Psa2g3106 2 356481596 356486018 ECH