Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3103 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTCTATTGTCCACAATGGTGTTATGCAATTTACCCTCCACCTCCACCTTCTCCCTTTGAATTCCCTGATGATGATTCAAGTTCAAATTTCTCTCCTCTTGTTATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTCACTTACTACACCATAATCTCCAAATACTGCGGCCGAAGAGGATCATCGTCACAAAGCGAATCACGCGAAACAAATGATGAACTCGAAGACAATCATCACCATAACCACTCAATCCATGAACCATGGCATCTTACAACAAATGGCCTAGATGAAGCTTTGATTAAGTCAATTACAGTTTGCAAGTACAAAAAGAATGATGGATTGGTCGATGTAACGGATTGTTCGGTATGTCTCAACGAGTTTCAAGACGACGAAAGTATTCGACTTTTACCTAAATGCAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCACTCGAATTGTCCTCTTTGTCGCGCTACCATATTCGCCTTCAATGCTTCGAGTTCAAGTGCTGCAACACTTCATTTAGCAGCACCGGTTACCATCGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACAATTGAATGAAATTGTAGATGTTGAAAGAGACAATGAATTTCATGAAGTGGAAGAAGTTCCGATTCATAAGACTCAATTTCGCGCTCTAAGCGATGTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGACAATGAAGACTATCATGAATCGATTCGAAGATCGGTTTCTATGGATCATTCATTTCAAAGTGGTATTTCAGTTGTTGTTGATGATGTTAATGTTATGCATATGAATGAAGAGCAAGATTGTTCCCAAGTTGAAGGTTCATCAAAGAGAGTAAGAGATGAAAGTGAAAGTAGTAAGTGTAGTTATAGAAGAAAGGTTTTGCACTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGTAGAACTGGTAGAGGAAGGCTTGGAATTTTGCATGTTTGA 1119 0.3798 MASLGNPKAWVPYMNNKDCSQGFCSFYCPQWCYAIYPPPPPSPFEFPDDDSSSNFSPLVIAIIGILASAFLLVTYYTIISKYCGRRGSSSQSESRETNDELEDNHHHNHSIHEPWHLTTNGLDEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSSAATLHLAAPVTIEQSSRNEVSLENQQLNEIVDVERDNEFHEVEEVPIHKTQFRALSDVGNLRGRHSVIEIRDNEDYHESIRRSVSMDHSFQSGISVVVDDVNVMHMNEEQDCSQVEGSSKRVRDESESSKCSYRRKVLHCVLSPIAMKRSFSSGRFFLSRTGRGRLGILHV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3103 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Psa2g3103 372 SUPERFAMILY RING/U-box 126 194 - -
Psa2g3103 372 CDD RING-H2_PA-TM-RING 146 189 - -
Psa2g3103 372 Pfam Ring finger domain 146 189 IPR001841 -
Psa2g3103 372 SMART ring_2 147 188 IPR001841 -
Psa2g3103 372 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 363 - -
Psa2g3103 372 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 363 IPR044675 -
Psa2g3103 372 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3103 Psa-Chr2 356017450 356019856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3103 1 331 C3H Transcription Factor Family AT3G03550 43.353 3.09e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3103 - - gmx:100792267 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3103 2 356017450 356019856 Psa2g3103 2 356017450 356019856 ECH