Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3102 ATGGCCACTTTAGAATCAGCCATAACCGTTTTCGCACCTCACCGTTTTTCAAACAACTACCGTTTCCTCGCTAAATCACCTAATTCCGTTAAACTCCAAGTCACTTCTATCTCTTCTTCCATTTTCTCCCATAGCCACAACAAACTTCACTTATCTTCTTTCAGAACCCAAACACCATGCTTCGCTTTACAAGAGGTAACAGAAGCAACAATTGAAGATGAAAAAACAGAGGAAACGGAGACATTAAACTACTTTAAGAACAAGTTTGCTGTGTTTAACTTACCTTGGTCACTGTCCGCGCAAGACATCAAAGAACTCTTCGCGGGATGCGGAACCGTAACCAGCATCAAGATTATAAAAGGAAAAAATGGGAGGGGAAAAGGTTATGCATTTCTTACTATGGATTCTGAAGAAGGGGCTCAGGCTGCTGTTGAACAATTTAATGGTCGTGAAATATCAGGCCGGATAATAAGGGTAGAGTTTGTAAAGATGTTCAAGAAACCTTCTCCTCCAGTCCCTCCTCCAAGTCCGGCTCCTAGGGAAGCAGCTCATGTAGTTTATGTATCCAACCTTGCGTGGAAGGCAAGACCTACACATCTTAGAGACATCTTCACTGAGAATTTCAAAGCGCCAGTTTCAGCCAGGGTTGTCTTTCAAACCTCTGCTGGGGGATCTGCTGGGTATGGATTTGTTTCTTATCATACAGAGGAGGAAGTACAGGCTGCCATTTCTGCTTTGGAAGGGAAGGAGTTACAGGGACGACCACTTCGCTTAAGAATAAGTAAAAAGAAAGTTAAAGCTGAGAATGAAGGTGAAAAACAAGATGCCGATGCTCAACTGGAAGGTGAAAACCAAAATGCCGATGCTCAACTAGAAGGTGAAAACCAAGATGCTGATACTCAACTGGAAGAATCATAA 918 0.427 MATLESAITVFAPHRFSNNYRFLAKSPNSVKLQVTSISSSIFSHSHNKLHLSSFRTQTPCFALQEVTEATIEDEKTEETETLNYFKNKFAVFNLPWSLSAQDIKELFAGCGTVTSIKIIKGKNGRGKGYAFLTMDSEEGAQAAVEQFNGREISGRIIRVEFVKMFKKPSPPVPPPSPAPREAAHVVYVSNLAWKARPTHLRDIFTENFKAPVSARVVFQTSAGGSAGYGFVSYHTEEEVQAAISALEGKELQGRPLRLRISKKKVKAENEGEKQDADAQLEGENQNADAQLEGENQDADTQLEES* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3102 305 MobiDBLite consensus disorder prediction 263 305 - -
Psa2g3102 305 PANTHER OS02G0815200 PROTEIN 7 282 - -
Psa2g3102 305 SUPERFAMILY RNA-binding domain, RBD 88 171 IPR035979 GO:0003676
Psa2g3102 305 MobiDBLite consensus disorder prediction 263 279 - -
Psa2g3102 305 CDD RRM_SF 91 160 - -
Psa2g3102 305 Gene3D - 181 291 IPR012677 -
Psa2g3102 305 PANTHER CHLOROPLAST, PUTATIVE-RELATED 7 282 - -
Psa2g3102 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Psa2g3102 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 257 IPR000504 GO:0003723
Psa2g3102 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
Psa2g3102 305 Gene3D - 64 180 IPR012677 -
Psa2g3102 305 Coils Coil 266 304 - -
Psa2g3102 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Psa2g3102 305 SUPERFAMILY RNA-binding domain, RBD 168 267 IPR035979 GO:0003676
Psa2g3102 305 MobiDBLite consensus disorder prediction 280 296 - -
Psa2g3102 305 SMART rrm1_1 185 259 IPR000504 GO:0003723
Psa2g3102 305 SMART rrm1_1 88 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3102 Psa-Chr2 356013747 356016725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3102 91 304 Eukaryotic Initiation Factors Gene Family AT2G23350 28.372 6.13e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3102 - - vra:106777856 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3102 2 356013747 356016725 Psa2g3102 2 356013747 356016725 ECH