Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3095 ATGAATCTCTGGAGCGACGATAATTCTTCAGTAATGGAGGCTTTCATGACCTCCTCTGATTTATCCACCTTATGGCCACCGGCGCCGCCGTCTCAGCCACCACAAACAACCACCGGATTCAACCAAGACACACTCCAGCAAAGGCTTCAAGCTTTAATCGAAGGCGCATCGGAACTCTGGACCTATGCTATCTTCTGGCAACCGTCTTATGATTATTCCGGTACTTCTCTTCTCGGTTGGGGTGACGGTTACTACAAAGGAGAAGAAGATAAAACAAAAGCGAAATCAAAGTCAAAATCTAAAGCTACTTCACCGGCTGAACAAGAACACCGGAGAAAAGTTCTCCGGGAACTTAATTCTTTAATCTCCGGTAATCCGGTTACCGACGAATCTGCCGTTGATGAAGAAGTTACCGATACGGAATGGTTCTTTTTAGTTTCCATGACTCAGTCTTTTGTCAACGGCGGCGGACTTCCCGGGCAAGCTTACTTTAACTCAACTCCGGTTTGGTTGGTCGGCGGCGAGAGTCTCTCCGTCTCGGCGTGTGACAGAGCGAGACAAGGTCAGGAATACGGTTTACAAACGCTGACATGTATACCATCGGCGAACGGTGTTTTGGAGCTTGGATCTACGGAATTGATTTATCAAAACAATGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTCAATAATAACTTTGAGTTTGGATCTTCTTGGCAGTTATATTTGATGAATAAAGTGAAGATGCTTTTCAATTTCAATAATAACTTTGAGTTTGGATCTTCTTGGCAGTTAGGTAATTCTGCTGCAATAGCTCATCAAGGTGAAAATGATCCATCTTCGATTTGGCTCAGCGATCCAGAAGCTAGAGATTCCGTTGATACAAATTCTCTTGCTGCAACAACAACAACAAACACATCAATTTCAAATCCAAGTCACCAACAACACCAGCACCAACTTCAGAACAATAACAATAATCAGAGTTTGAGTGTGAGTGTCACCAAGACGATACAATTTGAAACTCATGGTTCAAGTACTTTAACGGAAGTTCCTAGTGTTGTTCATGTTACAAGCAAGCCGAATAATCAAAGTTTCTTTCATAAAGAAATGAATCTTTCTGAATATGGTGGGAGTAACAATCATCATCAACGTTCACTGAAGCCGGAATCCGGTGAGATTCTGAGTTTTGGAGGCGAGAGTAAAAAGAGTTCTTATGTTACTAATAATGGAAATTCAAATTCGAATTTCTTCTCCGGTCAATCAAATATAGTATCAGTTGCTGAGGAAAACCACAACAATAACACCAACAACGGAAATGGAAAGAGGAGATCGCCTAATTCAAGAGGAAGCAACAACGATGATGGAATGTTATCTTTTACTTCCGGTGTAATTGTCCCACCGGCGGCATCCAATTTGAAATTCTCAGGTGGTACTGGTTGTGGTGATTCAGACCATTCGGATCTGGAGGCTTCGGTGGTGAAGGAGGTGGATAACAGTCGTGTGGTGGAGCCGGAAAAGAAGCCGAGAAAGAGAGGAAGGAAACCGGCAAATGGAAGAGAAGAACCATTGAATCATGTTGAAGCTGAGAGACAAAGAAGAGAGAAGCTGAATCAGAGATTCTATGCTCTTCGTGCAGTTGTTCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGAGATGCTATATCTTACATTACTGAACTGAAAACAAAGCTTCAGAAAACAGAATCTGATAAAGATGGATTAGAAAAACAACTTGATGAAATGAAGAGTGAGCTTCAGAAAATCAATGAAAACTCTTCTCATCCCCCACCCGCACCACCACAACAGCAGCAACAACAGCAACCAGTACCCAAAAAATCATCATCTTCCAATCAAGCTTTAATTGATTTGGATATCGACGTCAAGATTATAGGTTGGGATGCAATGATAAGGATCCAATGCAGTAAGAAAAACCACCCTGCAGCGAGGTTGATGGCGGCGTTAATGGAGCTTGACCTAGAAGTGCACCATGCCAGTGTGTCTGTGGTGAATGACTTGATGATACAACAAGCAACTGTGAAGATGGGGAGTCGTTTTTACACCCAGGAGCAGCTTCGGGCAGCATTGTCCTCTAAAGTCGGGGATGTTCAATAA 2142 0.4234 MNLWSDDNSSVMEAFMTSSDLSTLWPPAPPSQPPQTTTGFNQDTLQQRLQALIEGASELWTYAIFWQPSYDYSGTSLLGWGDGYYKGEEDKTKAKSKSKSKATSPAEQEHRRKVLRELNSLISGNPVTDESAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAYFNSTPVWLVGGESLSVSACDRARQGQEYGLQTLTCIPSANGVLELGSTELIYQNNDLMNKVKMLFNFNNNFEFGSSWQLYLMNKVKMLFNFNNNFEFGSSWQLGNSAAIAHQGENDPSSIWLSDPEARDSVDTNSLAATTTTNTSISNPSHQQHQHQLQNNNNNQSLSVSVTKTIQFETHGSSTLTEVPSVVHVTSKPNNQSFFHKEMNLSEYGGSNNHHQRSLKPESGEILSFGGESKKSSYVTNNGNSNSNFFSGQSNIVSVAEENHNNNTNNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPAASNLKFSGGTGCGDSDHSDLEASVVKEVDNSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDGLEKQLDEMKSELQKINENSSHPPPAPPQQQQQQQPVPKKSSSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3095 713 PANTHER TRANSCRIPTION FACTOR MYC2 39 241 - -
Psa2g3095 713 PANTHER TRANSCRIPTION FACTOR MYC2 244 710 - -
Psa2g3095 713 Gene3D - 513 602 IPR036638 GO:0046983
Psa2g3095 713 MobiDBLite consensus disorder prediction 89 111 - -
Psa2g3095 713 MobiDBLite consensus disorder prediction 596 627 - -
Psa2g3095 713 Coils Coil 567 601 - -
Psa2g3095 713 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 228 IPR025610 -
Psa2g3095 713 CDD bHLH_AtAIB_like 518 594 - -
Psa2g3095 713 Pfam Helix-loop-helix DNA-binding domain 525 570 IPR011598 GO:0046983
Psa2g3095 713 MobiDBLite consensus disorder prediction 491 531 - -
Psa2g3095 713 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 521 570 IPR011598 GO:0046983
Psa2g3095 713 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 524 592 IPR036638 GO:0046983
Psa2g3095 713 PANTHER MYC 39 241 IPR045084 GO:0003700|GO:0006355
Psa2g3095 713 PANTHER MYC 244 710 IPR045084 GO:0003700|GO:0006355
Psa2g3095 713 SMART finulus 527 576 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3095 Psa-Chr2 354776103 354779072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3095 1 710 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 51.090 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3095 bHLH-MYC_N 1.2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3095 K13422 - gmx:100776289 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3095 2 354776103 354779072 Psa2g3095 2 354776103 354779072 ECH