Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3054 ATGGAACAGTATGAAGTTCTAGAACAGATTGGTAAGGGCTCTTTTGCTTCTGCTCTTCTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTCAAGAAGATCCACCTTGCTCGTCAGACTGAAAGAATCCGTAGATCTGCTCACCAAGAGATGGAGCTTATTTCTAAAGTTCGTAATCCTTTCATTGTAGACTATAAAGATTCAGGGATAGAAAATGGTTGTTTTGTATGTATTGTCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTAGTTCAACTCTTGATGGCACTTGATTACTTGCATATAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACAAGTGATGATCTTGCTTCTTCGATTGTGGGGACTCCGAGTTATATGTGCCCCGAGCTTCTTGCTGATATACCATATGGATCTAAGTCAGGTATCTGGTCTTTGGGATGCTGCGTATATGAAATGGCTGCGCACAAACCAGCTTTTAAAGCTCTCGATATGCAAGCACTAATTAACAAAATAAACAAGTCGTTAGTGTCCCCACTACCAACAGTTTATTCTGGTACTTTTCGAGGCATGGTGAAGAGTATGCTACGGAAAAATCCCGAGCATAGGCCAAGTGCTGCGGAGCTACTAAATCATCCACATCTTCAACCTTATATACTTAAAGTTCATCTGAAACTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAATGGACCGACTCGAACCATGCTAGGAGAAGTCGATTTGTAGAACCGGAATCTGTTTCCACTTTCTCTGGCAGAGTTAAGCGATTGTCATGA 930 0.4 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIHLARQTERIRRSAHQEMELISKVRNPFIVDYKDSGIENGCFVCIVIGYCEGGDMAEAIKKANCVHFSEERLCKWLVQLLMALDYLHINHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSGIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVSPLPTVYSGTFRGMVKSMLRKNPEHRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVEPESVSTFSGRVKRLS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3054 309 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa2g3054 309 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3054 309 CDD STKc_Nek 3 258 - -
Psa2g3054 309 PANTHER SERINE/THREONINE-KINASE NEK4 1 309 - -
Psa2g3054 309 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3054 309 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Psa2g3054 309 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa2g3054 309 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 309 - -
Psa2g3054 309 PIRSF ILK 1 259 - -
Psa2g3054 309 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g3054 309 SUPERFAMILY Protein kinase-like (PK-like) 1 292 IPR011009 -
Psa2g3054 309 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3054 Psa-Chr2 352406742 352408123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3054 1 253 MAP Kinase Kinase Gene Family AT4G29810 31.559 1.49e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa2g3054 Pkinase 7.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3054 K08857 - gmx:100810347 570.081