Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3051 ATGGAGCTTTCTCAACTTGGTTTCCTTGAGGAACTACTTGCTCCTAAAAAAGACTCATGGAACGCTTTATCCACCGGTTTAAACGACCTACTTCTTCCCAATGGTTGGAACTTCGACTCATTCGATGAAAATCTACTCATTAACCCGTCTCTAAACCCTTCATTTGCTTCGTTTTCGTCACCGTTAGACCATAGATTTGAATGCTCTTATGGAACTGATGCTGTTTCATACCCTTTTGTGGATGGGTTTACTGTTCCAGAGCTTGATGATTCAACACCGCTTTTACCGCAAGAGGGTGTTGAAGAGTTCGGTTTTGTTGGAAGTGAGAGCAAGGGTTTGGAACAGAGTGGTAAAATTAGTTGTAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTGATATGGGTTTGTGTGGTGGTGGTGGTGGTGGTGGTCAGAAGAAAGGTAAATCCAAAAGGGTTGAAGGACAACCTTCCAAGAATCTCATGGCGGAAAGAAGGAGGAGAAAGAGGTTGAATGATAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGTAAGATGGACAGGACATCGATTCTTGGGGATACAATTGATTACATGAAAGAGCTTCTTGAAAGGATCGGAAAGTTGCAAGAAGAAATGGATGAAGGAACAGATCAGATAAATGTTTTGGGAATTTCTAAGGAGTTAAAGCCAAATGAAGTCATGTTTAATGTTGAGAGGAGAGATCAAGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGTTTATTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTTGAGATTCACCAATGTGTTATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTCGCTGGACAGAGAAATTGTATGAACCCTGAAGAGATAAAGCAATCACTGTTCAGGAATGCAGGTTATGGAGGGAGGTGCCTCTAG 969 0.4169 MELSQLGFLEELLAPKKDSWNALSTGLNDLLLPNGWNFDSFDENLLINPSLNPSFASFSSPLDHRFECSYGTDAVSYPFVDGFTVPELDDSTPLLPQEGVEEFGFVGSESKGLEQSGKISCKVEEQVSEIPVFDMGLCGGGGGGGQKKGKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMDEGTDQINVLGISKELKPNEVMFNVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVAGQRNCMNPEEIKQSLFRNAGYGGRCL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3051 322 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
Psa2g3051 322 Coils Coil 202 222 - -
Psa2g3051 322 CDD ACT_UUR-ACR-like 248 289 - -
Psa2g3051 322 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 322 - -
Psa2g3051 322 Gene3D - 147 222 IPR036638 GO:0046983
Psa2g3051 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Psa2g3051 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 224 IPR036638 GO:0046983
Psa2g3051 322 SMART finulus 162 211 IPR011598 GO:0046983
Psa2g3051 322 PANTHER TRANSCRIPTION FACTOR BHLH61-RELATED 2 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3051 Psa-Chr2 351374240 351376426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3051 29 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.203 2.51e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g3051 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3051 - - gmx:100806571 482.256