Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3019 ATGAACCTAGAAGAGAAAGTTACCATGGACTTGGTTCCTCCATCTGATCAACACCTTTGTTACGTTCGTTGCAACTTCTGTAACACTGTCCTCGCTGTTGGAATACCATGCAAGAGGCTACTAGACACTGTGACAGTAAAGTGTGGACACTGCAGCAACCTCTCTTTTCTCACAACAAGACCACCAAATTCCAAAACTCAGACTGTTGATCATACCCTCACTCTCCAGGGAATTTACAGTTGCAAAAAGGGACAACCATCGTCTTCCTCTTCTTCTTCCCCAACTACATCACCTGAGTCATTGTCCCCTAAACCACCACCATTTGTTGTCAAACCACCAGAGAAAAAGCACCGTCTGCCTTCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCGAACCCTCAGATCCCACATAGAGAAGCTTTCAGTGCTGCTGCAAAAAATTGGGCTAGGTTCATCCCTAATTCACCAACCAGTTCACTTTCTGCAACTAAACGTAACACTGAATGA 525 0.4495 MNLEEKVTMDLVPPSDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQGIYSCKKGQPSSSSSSSPTTSPESLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFIPNSPTSSLSATKRNTE* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3019 174 PANTHER PROTEIN CRABS CLAW 7 171 - -
Psa2g3019 174 Gene3D High mobility group box domain 106 169 IPR036910 -
Psa2g3019 174 MobiDBLite consensus disorder prediction 81 116 - -
Psa2g3019 174 Pfam YABBY protein 16 157 IPR006780 GO:0007275
Psa2g3019 174 MobiDBLite consensus disorder prediction 81 98 - -
Psa2g3019 174 CDD HMGB-UBF_HMG-box 118 171 - -
Psa2g3019 174 PANTHER PROTEIN YABBY 6-RELATED 7 171 IPR006780 GO:0007275
Psa2g3019 174 SUPERFAMILY HMG-box 100 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3019 Psa-Chr2 345367234 345368944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3019 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 66.860 6.66e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa2g3019 YABBY 2.3e-54 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3019 K25796 - gmx:100819079 275.404