Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g3007 ATGGAATCTTGGAGTTACATTCCTGAAGATAGAAGCTATTTGTTTTCTGATGAAATGGAGTTTTCACTTGATGCTTTTACGAGACGTCGAAAACCATCCGTTGAATTGGAGAACAAATCTTCATGTAACTTTGAAAGAGATGGATTTAAAAGTATGGAGTTTGTGGACTTGGGATTTCCCGACTTTTTGCAGAAGTCTTTTCATGGTAGCAAACCTATGGAGTCATCTGGGGTTGTTCACAGTTCGGTTCAGACATCAAGTTGTGAGCTAGATAGTAATAATTCTAGTAAAAGAGGGAATTCTTCTATCCATGTTATTGCTTTTGATTCGTCTTTCAGGGAAGAAGATTATGAGTCAAAGCATTTAAGTTCTCTATTTGAATCGAAAAATCATGATTCTTCATTGTCAACTTTTTTAAATCAAGGTGCAAGTAATGACAGAGATGCCAAAGCGTTTGTTTCCACGCCGATACATCAAACCGTGCTCTCGAAGAGAGCTCGCACTTCCACTTTACCTTCCTCAGCTCCTGTATGCCAAGTTTATGATTGTAATATGGATCTTAGCACCTCGAAAGATTATCACAAACGGCATAAAGTTTGCGATGTTCACTCCAAGACAGCTAAAGTTGTTGTCAATGGCGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAGTTCGATGATGATAAGCGCAGTTGTCGTAGGCGTTTAGCTGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGACTCTTCAATCTTATCAAGACATGTTTCAAAGTGGGATCCTTTTCTCAGCAAAGCATGATCAAATCTCTCAAAGTGGACATATCAAACTAGAAGAGGAACCAATTTGCAGCCCTCAACTAGAACCGCCCGCCACACTTGGTCACGAGTTATCTAGTCGTGCTCTCTCTCTTCTGTCATCTCAGTCACAGAATCCATCGCGTCATGCAGCAGGAAATCCATTCGCTACCTCCCTTCTTTTTCACGGCATCCACGTGCAAGATAGTGATGACCAGGTTTCTGGACCACATTTGAGAATAAGTTCTGTCGATAAACATGAACGAAATGAATCTTTATCACTTGAGATAAACTCTAAGGGAGTTATCAAATCTGAAAATGGAGTTACTGTTGATTTGTTTCAACTGTCTTCTCATCTTCAAAGAGTGGAGCAGCAAAGAAATTCTGTTTTGAGTAGTTTAGTTATAGTACCTAATAGGTTGATAGATTCAATGGAAGTGTGTTCTTCTGTTAATGACAAGCATGGGAGTTGCATAAGTAGTCTTGAACTCACTTTTAGTGAGTCGTTACATATACAAGATTCTGAAAAATTGGAGGATGCATCTAAGGGGCATGAGATATGCAATGTAGTAGAGGAAAACGAGGTTATTAAACCGAAGGAAGCAAAACTCAACGCGGTGTCTTTGAAAAAATCGGCTACCTTTCCAAATCCTCGCGAGACAGCATCTGTTACAGAATCACCTTCTGAGCATTCTGCCCCTTCGGAACTTAAATCTGCCATGAAAGGTAGTCGTGATAAAAACGGGGAAGGGCATGTGAAATTGACAGTGAAATGGGCTGCTGATGTGTATGATCCAATACCTACATTAGTGTCGCATACTGTCAAAAACAAGAAACAGCCGAAGTCCAAGAAGAAGAAGAATGAAAAGAAAAGTTTGAAGAAAGGTAACAAGGGAAATTCAACTCGAGGGAGCAATGGCAAAGATAAAGATAAGAAACAGTCTCGCAACCTTGCCAAGATTCAAACTGCGGAGCTAGTTTCTTGA 1830 0.4027 MESWSYIPEDRSYLFSDEMEFSLDAFTRRRKPSVELENKSSCNFERDGFKSMEFVDLGFPDFLQKSFHGSKPMESSGVVHSSVQTSSCELDSNNSSKRGNSSIHVIAFDSSFREEDYESKHLSSLFESKNHDSSLSTFLNQGASNDRDAKAFVSTPIHQTVLSKRARTSTLPSSAPVCQVYDCNMDLSTSKDYHKRHKVCDVHSKTAKVVVNGVEQRFCQQCSRFHLVAEFDDDKRSCRRRLAGHNERRRKPQFDYMTSKQHKTLQSYQDMFQSGILFSAKHDQISQSGHIKLEEEPICSPQLEPPATLGHELSSRALSLLSSQSQNPSRHAAGNPFATSLLFHGIHVQDSDDQVSGPHLRISSVDKHERNESLSLEINSKGVIKSENGVTVDLFQLSSHLQRVEQQRNSVLSSLVIVPNRLIDSMEVCSSVNDKHGSCISSLELTFSESLHIQDSEKLEDASKGHEICNVVEENEVIKPKEAKLNAVSLKKSATFPNPRETASVTESPSEHSAPSELKSAMKGSRDKNGEGHVKLTVKWAADVYDPIPTLVSHTVKNKKQPKSKKKKNEKKSLKKGNKGNSTRGSNGKDKDKKQSRNLAKIQTAELVS* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g3007 609 Gene3D - 169 239 IPR036893 GO:0003677|GO:0005634
Psa2g3007 609 MobiDBLite consensus disorder prediction 495 530 - -
Psa2g3007 609 MobiDBLite consensus disorder prediction 495 515 - -
Psa2g3007 609 MobiDBLite consensus disorder prediction 549 609 - -
Psa2g3007 609 SUPERFAMILY SBT domain 176 257 IPR036893 GO:0003677|GO:0005634
Psa2g3007 609 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 310 386 IPR044817 GO:0003677
Psa2g3007 609 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 303 IPR044817 GO:0003677
Psa2g3007 609 MobiDBLite consensus disorder prediction 558 574 - -
Psa2g3007 609 MobiDBLite consensus disorder prediction 585 599 - -
Psa2g3007 609 Pfam SBP domain 178 251 IPR004333 GO:0003677
Psa2g3007 609 ProSiteProfiles Zinc finger SBP-type profile. 175 252 IPR004333 GO:0003677
Psa2g3007 609 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 38 303 - -
Psa2g3007 609 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 310 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g3007 Psa-Chr2 343401308 343404854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g3007 132 409 SBP-box Gene Family AT1G69170 41.590 1.04e-61 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa2g3007 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g3007 - - mtr:MTR_5g046670 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g3007 2 343401308 343404854 Psa2g3007 2 343401308 343404854 ECH