Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2999 ATGCAAATGTTTTCATTCTTTTCAATGCTTAACTCTTCCTCTTCCACTTCTTCATTCCTTTGTGTCATTATCCTCCTCCAAACTACTTTCTCTTTCTCTTATTCTAATCCTAACCATGAAGTCACAACTCTCTTCACATGGCTTCATACTTCATCTTCACAACCACCACCTCCATCATTCTCTAACTGGAATGTCCTTGACATAAATCCATGCAACTGGACCTCCATAACATGTTCTTCACTATCCTTTGTAACTGAAATCAATATTCAGTCCATCACTCTTCAGCTTCCTATACCTTCAAACCTCTCTTCATTTCAGTTTCTGAATAAACTTGTTATTTCTGATTCCAATCTCACTGGAGTTATTCCTTTTGACATTGGTCATTGTTTTTCACTTACTGTTATTGATCTTAGCTTTAACAATCTTATCGGTTCGATTCCTGCGAGTATCGGGAAGTTGCATAATCTAGTTAACTTGTCTTTGAATTCAAATCAGCTTACTGGTAAAATTCCAGATGAGATAAGTAACTGCATTAGTCTGAAAAATCTTCTTCTTTTCGATAATCAGTTAGGTGGAAGTATACCGGATTCGATTGGAGAATTGTCGAAACTCGAAGTTCTTAGAGCAGGTGGAAACAAAGATATAACAGGGAAGATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTGGGGCTTGCTGATACAAGAATTTCAGGCTCTTTACCTGTTTCTTTTGGTAAACTTAAAAGGCTTCAAACTTTGTCAATTTATACAACTATGATTTCTGGTGAAATTCCTAAAGAGATAGGTGATTGTTCTGAGCTTGTTGATTTGTTTCTGTATGAAAATAGTTTATCAGGTTCTATTCCATCAGAGATTGGTAAGCTCAAGAAGCTTGAACAGTTGTTTCTATGGCAGAATGGACTTGTTGGTGCTATTCCAAATGAGATTGGTAACTGTTCAAGTTTGAGAAACATTGATCTATCTTTGAATTCTTTATCTGGAACTATACCTTTGTCTTTAGGGGATCTTTTAGAGCTTCAGGAGTTTATGATCAGTGATAATAATGTATCTGGTTCCATTCCTGCAACACTTTCAAGTGCTAACAAGCTTCAACAGTTGCAAGTTGATACGAATCAGCTCTCGGGTTTGATTCCGTCGGAGATTGGGAAGTTGTCGAGTCTTTTAGTGTTTTTCGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTTAAGTTTGGGAAACTGTAGTAACTTACAAGCACTTGATTTGTCGAGAAATTCGCTCACTGGTAGTATTCCTTCTGGACTATTTCAGCTTCAAAACTTAACAAAACTGCTTCTCATTTCCAATGACATATCAGGTTCTATACCATCGGAAATCGGTAGTTGTAAGTCTCTTATAAGGTTGAGGCTTGGAAGCAATAGGATTGTTGGAAGCATTCCTAAGACAATTGGAAGTCTCAAGAGTTTGAACTTTTTAGATCTCTCGGGGAACCGTCTTTCGGGTCCGGTTCCTGATGAAATAAGAAGCTGCACAGAATTGCAGATGATAGACTTCAGTGCTAACAACTTAGAAGGTCCGCTTCCGAATTCGTTGTCGTCGCTATCTTCACTTCAGGTATTGGATGCTTCTTTTAACAAGTTTTCAGGTCCGTTGCCAGCGAGCTTTGGTCGCCTTGTTTCGTTAAGTAAGTTGATCCTAGGAAATAACTTGCTTTCGGGACCGATTCCTTCATCACTAGGCCTATGTTCAAGTCTCCAACTTCTTGATCTTAGTAGCAATCAGCTCACTGGAAGCATACCCGACGAATTAGGCCAAATCGAAGCCCTAGAAATCGCTCTCAATCTTAGTTGCAATCTACTAAGTGGAACAATACCGCCTCGAATATCTTCTCTTAACAAGCTTTCCATATTAGACCTTTCATATAACCAGTTGGAAGGAGATTTACAAACTCTCTCAGAGCTAGATAACCTTGTCTGCCTCAATGTTTCTTACAACAAATTTTCCGGCTATCTTCCCGATAACAAGCTTTTCAGACAGTTAACATCGAAAGACATCACTGGAAATCAAGGACTCTGCACTTCAGGTCAGGATTCATGTTTTGTGAAGGATTCTAGCAAAACCGATATGGGGTTGAATGAGAATGAGGTAAGGAAATCGCGAAGGATTAAGCTAACCATTGGATTGCTGATAGCGTTAACAGTATTAATGATACTTATGGGGATAACTGCTGTGATCAAAGCAAGGAGAACCATTCGAGACGATGATTCGGAGTTAGGAGACTCGTGGCCATGGCAATTCATACCATTCCAGAAGCTAAAATTTTCAGTGGAGCAAGTACTGAGATGTTTGATTGATAGGAATATAATCGGTAAGGGATGTTCGGGTGTTGTTTATCGAGGTGAAATGGATAACGGGGAAGTCATTGCTGTGAAGAAACTTTGGCCTATAACAACCGATGAAGGAGAGGCGTTGAAGGATTTCAAAAGTGGAGTTCGAGATTCGTTCTCAGCTGAGGTTAAGGCGCTTGGCTCAATCCGTCATAAGAACATTGTGAGGTTCTTAGGTTGTTGTTGGAACAAAAAAACAAGATTGCTTATTTTTGATTATATGCCGAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACTGGAAATTCTCTTGAATGGGAACTTAGGTTCCGAATTCTGTTAGGTTCTGCAGAAGGACTTGCGTATCTACACCACGACTGCGTCCCCCCTATAGTACACAGAGATATTAAAGCCAATAACATCTTAATTGGACTTGAATTTGAACCTTATATAGCCGACTTTGGCTTGGCAAAGCTTGTCGATGATGGAGATATCGGTCGTTCTTCCAATACAGTAGCCGGTTCCTACGGATACATAGCTCCAGAATACGGCTACATGATGAAGATCACAGAAAAGAGCGATGTTTATAGCTACGGTGTAGTTTTGCTAGAAGTCTTGACAGGCAAGCAACCGATCGATCCAACAATACCAGATGGCTTACACATTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTAGCTTACTCTCAAGACCAGAATCAGAAATAGAAGAAATGATACAGGCATTGGGAATAGCCTTATTGTGTGTAAATTCATCTCCAGATGAAAGACCAACCATGAGAGATATAGCTGCAATGTTGAAGGAAATAAAGCATGAAAGAGAGGAATATGCGAAATTCGACGCGCTTTTAAAAGGGTCTCCTGCAAATGATTCCAAAGTTGTTGCAACATCTTCATCAGCTTCAATCATGCAAAGTTTGAATGCAAAAAGCAATAATACAAGCTTCTCAGTGACTTCACTGCTTCATTCATCTTCAAGTTCTAAGCTGAGTTTCAAATGA 3396 0.3943 MQMFSFFSMLNSSSSTSSFLCVIILLQTTFSFSYSNPNHEVTTLFTWLHTSSSQPPPPSFSNWNVLDINPCNWTSITCSSLSFVTEINIQSITLQLPIPSNLSSFQFLNKLVISDSNLTGVIPFDIGHCFSLTVIDLSFNNLIGSIPASIGKLHNLVNLSLNSNQLTGKIPDEISNCISLKNLLLFDNQLGGSIPDSIGELSKLEVLRAGGNKDITGKIPEEIGECSNLTVLGLADTRISGSLPVSFGKLKRLQTLSIYTTMISGEIPKEIGDCSELVDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGDLLELQEFMISDNNVSGSIPATLSSANKLQQLQVDTNQLSGLIPSEIGKLSSLLVFFAWQNQLEGSIPLSLGNCSNLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCKSLIRLRLGSNRIVGSIPKTIGSLKSLNFLDLSGNRLSGPVPDEIRSCTELQMIDFSANNLEGPLPNSLSSLSSLQVLDASFNKFSGPLPASFGRLVSLSKLILGNNLLSGPIPSSLGLCSSLQLLDLSSNQLTGSIPDELGQIEALEIALNLSCNLLSGTIPPRISSLNKLSILDLSYNQLEGDLQTLSELDNLVCLNVSYNKFSGYLPDNKLFRQLTSKDITGNQGLCTSGQDSCFVKDSSKTDMGLNENEVRKSRRIKLTIGLLIALTVLMILMGITAVIKARRTIRDDDSELGDSWPWQFIPFQKLKFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEVIAVKKLWPITTDEGEALKDFKSGVRDSFSAEVKALGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLEWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDIGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHIVDWVRQKRGLEVLDPSLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDALLKGSPANDSKVVATSSSASIMQSLNAKSNNTSFSVTSLLHSSSSSKLSFK* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2999 1131 SMART serkin_6 787 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2999 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 41 153 IPR032675 -
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 154 226 IPR032675 -
Psa2g2999 1131 SUPERFAMILY L domain-like 381 701 - -
Psa2g2999 1131 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Psa2g2999 1131 SMART LRR_sd22_2 298 330 - -
Psa2g2999 1131 SMART LRR_sd22_2 514 540 - -
Psa2g2999 1131 SMART LRR_sd22_2 153 176 - -
Psa2g2999 1131 SMART LRR_sd22_2 635 660 - -
Psa2g2999 1131 SMART LRR_sd22_2 586 607 - -
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 435 530 IPR032675 -
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 531 615 IPR032675 -
Psa2g2999 1131 Pfam Protein tyrosine and serine/threonine kinase 791 1064 IPR001245 GO:0004672|GO:0006468
Psa2g2999 1131 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 14 1124 - -
Psa2g2999 1131 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Psa2g2999 1131 SUPERFAMILY Protein kinase-like (PK-like) 765 1066 IPR011009 -
Psa2g2999 1131 ProSiteProfiles Leucine-rich repeat profile. 588 610 IPR001611 GO:0005515
Psa2g2999 1131 PRINTS Leucine-rich repeat signature 589 602 - -
Psa2g2999 1131 PRINTS Leucine-rich repeat signature 635 648 - -
Psa2g2999 1131 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 338 434 IPR032675 -
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 234 337 IPR032675 -
Psa2g2999 1131 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 1124 - -
Psa2g2999 1131 ProSiteProfiles Protein kinase domain profile. 787 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2999 1131 Gene3D Transferase(Phosphotransferase) domain 1 874 1084 - -
Psa2g2999 1131 Gene3D Ribonuclease Inhibitor 616 703 IPR032675 -
Psa2g2999 1131 SMART LRR_typ_2 490 514 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 587 610 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 538 561 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 635 658 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 418 442 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 298 322 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 562 586 IPR003591 -
Psa2g2999 1131 SMART LRR_typ_2 153 177 IPR003591 -
Psa2g2999 1131 ProSiteProfiles Leucine-rich repeat profile. 420 442 IPR001611 GO:0005515
Psa2g2999 1131 SUPERFAMILY L domain-like 50 406 - -
Psa2g2999 1131 Gene3D Phosphorylase Kinase; domain 1 772 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2999 Psa-Chr2 342258850 342263034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2999 59 1100 Receptor kinase-like Gene Family AT5G56040 48.590 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa2g2999 PK_Tyr_Ser-Thr 1.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2999 - - mtr:MTR_5g045910 1898.25