Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2978 ATGGATACCACGCTCTCCGTTCTCAAGGACTACTTTGGGTTTATGAGTTTTCGACCGTATCAGCAAGAGGTCATCGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTTATGGCTATTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCATTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAGGATCATGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGCGCTCAGAAGGATTATACTATTCAGGGTAAAGCCGAGCGCGGTCAATTTGACATTCTGTTTATGACTCCTGAAAAGGCATGCTCAATTCCTACAAGTTTCTGGTCCAACTTGCTAAAGGAAGAAATTAGTCTTTTTGATGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGATAGAATACAAGCAGTTAAACAAGTTACGTGGTGTTCTAATAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGTTGAATAATCCTTACATTGCTGTTGAAATTTCAAAAGAAGTTGCTAATGGTTGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAGCAGATATATAAGTCACTTATGGAAGTCGGTATTAATGCTGGAATGTACCATGGGCAAATGGATGGAAGATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTTATTCATTATGGCTGTCCAATAAATCTAGAGTCCTACTACCAGGAAAGTGGAAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGCGACTATTATGCTGCAGATTTAAAATCGGACAACCAAAAAAAAGTTGTTATGGAGTCGATGCTTGAGGCTCAACACTATTGTTTGACGGCAACTTGCAGAAGAAAGTTCTTGCACGAACACTTCAGAGTTATGTTCACAACTTGGAGCAGTCTCGGGTATGCTCGGCGACTGCTGCCGAGCAATGGGTAA 1137 0.3984 MDTTLSVLKDYFGFMSFRPYQQEVIEKIIEKRDCLVVMAIGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDHVMALKQRGIKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACSIPTSFWSNLLKEEISLFDVDEAHCISEWGHDFRIEYKQLNKLRGVLIDVPYVGLTATATEKVRFDITNSLKLNNPYIAVEISKEVANGCSTIIYCTTIKDVEQIYKSLMEVGINAGMYHGQMDGRSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPINLESYYQESGRCGRDGIASACWLYYTRSDFSKGDYYAADLKSDNQKKVVMESMLEAQHYCLTATCRRKFLHEHFRVMFTTWSSLGYARRLLPSNG* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2978 378 Gene3D - 189 366 IPR027417 -
Psa2g2978 378 CDD DEXHc_RecQ 5 193 - -
Psa2g2978 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 313 IPR027417 -
Psa2g2978 378 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 7 358 - -
Psa2g2978 378 Pfam Helicase conserved C-terminal domain 197 298 IPR001650 -
Psa2g2978 378 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 194 IPR004589 GO:0004386|GO:0006310
Psa2g2978 378 Gene3D - 1 188 IPR027417 -
Psa2g2978 378 SMART ultradead3 13 209 IPR014001 -
Psa2g2978 378 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 187 338 IPR001650 -
Psa2g2978 378 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 358 - -
Psa2g2978 378 SMART helicmild6 218 299 IPR001650 -
Psa2g2978 378 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Psa2g2978 378 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2978 Psa-Chr2 340676228 340677511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2978 12 312 Eukaryotic Initiation Factors Gene Family AT3G19760 23.214 1.39e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2978 K03654 - gmx:100797777 588.186