Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2977 ATGGATACCACGCTCTCCGTTCTCAAGGACTACTTTGGGTTTATGAGTTTTCGACCGTATCAGCAAGAGGTCATCGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCATTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAGGATCAGGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGCGCTCAGAAGGATTATACTATTCAGGGTAAAGCCGAGCGCGGTCAATTCGACATTCTGTTTATGACTCCTGAGAAGGCATGCTCAATTCCTACAAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGTTGAATAATCCTTACATTGTTGTTGATGTAGAGCAGATATATAAGTCACTTATGGAAGTCGGTATTAAAGCTGGAATGTACCATGGGCAAATGGATGGAAGATCACGAGAGGAGTCTCATAGATTACTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGTCCAAAAAATCTAGAGTCCTACTACCAGGAAAGTGGAAGATGTGGTAGACATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTTAAAGGGCGACTATTATGCTGCAGATTTAAAATCGGACAACCAAAAAAAAGCTGTTATGGAGTCGTTGCTTGAGGCTCAACACTATTTTTTGACGGCAACTTGCAGAAGAAAGTTCTTGCACGAACACTTCAGAGTTATGTTCACAACTTGGAGCAGTCTCGG 1043 0.4075 MDTTLSVLKDYFGFMSFRPYQQEVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACSIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKLNNPYIVVDVEQIYKSLMEVGIKAGMYHGQMDGRSREESHRLLVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRHGIASACWLYYTRSDFLKGDYYAADLKSDNQKKAVMESLLEAQHYFLTATCRRKFLHEHFRVMFTTWSSL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2977 347 Gene3D - 1 188 IPR027417 -
Psa2g2977 347 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 194 IPR004589 GO:0004386|GO:0006310
Psa2g2977 347 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Psa2g2977 347 SMART helicmild6 198 279 IPR001650 -
Psa2g2977 347 Gene3D - 189 345 IPR027417 -
Psa2g2977 347 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 157 324 IPR001650 -
Psa2g2977 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 291 IPR027417 -
Psa2g2977 347 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Psa2g2977 347 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 7 338 - -
Psa2g2977 347 SMART ultradead3 13 207 IPR014001 -
Psa2g2977 347 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 338 - -
Psa2g2977 347 CDD DEXHc_RecQ 5 195 - -
Psa2g2977 347 Pfam Helicase conserved C-terminal domain 202 279 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2977 Psa-Chr2 340589170 340590334 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2977 167 279 Eukaryotic Initiation Factors Gene Family AT5G11170 26.496 7.93e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2977 K03654 - gmx:100797777 555.058