Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2975 ATGGCGATGATGCAAGGAGTTCAAAAGAACACTCTCTACGTCGGAGGTTTAGCCGAAGAGGTCAACGAATCCATCCTTCACGCAGCGTTCATACCATTCGGAGATATTAAGGATGTCAAGACCCCTCTTGACCAAGCCACTCAGAAGCATCGCTCCTTCGGCTTCGTCACTTTTCTTGAAAGGGAAGACGCTTCCTCCGCCATGGATAATATGGACGGTGCTGAACTCTACGGCCGTGTCCTCACCGTTAATTACGCACTTCCTGAAAAAATTAAGGGCGGTGAACAAGGCTGGGCTGCTCAACCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAACAGGAGGAGGACATGCGCCGATGA 369 0.5122 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASSAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEDMRR* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2975 122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Psa2g2975 122 Gene3D - 3 121 IPR012677 -
Psa2g2975 122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Psa2g2975 122 PANTHER TRANSFORMER-2-RELATED 5 122 - -
Psa2g2975 122 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Psa2g2975 122 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 122 - -
Psa2g2975 122 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Psa2g2975 122 SMART rrm1_1 11 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2975 Psa-Chr2 340256090 340257276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2975 3 88 Eukaryotic Initiation Factors Gene Family AT3G11400 36.047 1.04e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2975 - - ccaj:109797476 246.128