Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2934 ATGTTTCTCCGACGAACCACCGTACTTTTATTCAAAAACAACCTCACCGTTCCACCACTCCGCCGCCACCTCTCAAACCCCATTTCACCGGTAAACCAAGACGATCTCCTCCGAGTCTGCACCATTCTCTACCAACAACAAAACTCGCCCGAGTCACGTCTCCACTCAAAACTCACCTCTTCCAACTTCCATCTCACCCACGAATTCTTCCTCCAAGTCTGCAACAGTTTCCCTTATTCATGGCGACCCGTTTACCGCTTCTTCCTTTTCACGCAACAACAGCAAGAGAAAAACCCAACTTTCACTCACTCCTCTGTTTCCTTCAACAAAATGCTCGATGTTGTTTCGAAGTCTCGCAACATTGATCTCTTCTGGAGCCTTGTTAACGAAACGGCGACTCGTCGTTTGGCCAACGATAGGACCTTTGTGATTGCTTTGAAGACTCTTGGTGGTGCTAGAGAGTTGAAAAAGTGTTTGGAGTTTTTCCACTTGATGAATTGTAATGGGTATGGTTATAGTCTTGAGAGATTGAATAAAGTTGTTGATGAAATGTGTAGGGTTAAGCTTGTTGAGGAAGCAAAGTTTGTTGTTTTCAAGTTGAAAGATTGGATTAAGCCCGATGGTGTTAGTTATAAGCATTTGATTAGTGGGTTTTGTGAAAAGGGTGATTTGATTGAAGCTTCCAAGATATGGAATTTGATGGTGGATGAAGGTTTTGTTCCTGATGTTGATGCTGTTGAGAAATTTATGGAGACGTTTTTCAAGGTTAATCAATTTGGCGAGGCTTTGAAGCTTTTTGAAACAATGAGGTTGAAGAGAATGGATGAACTTGATGTTTCAACTTATAGGCTTGTGATTAAGTGGTTGTGTAAAAAGGGGATGGTGAATCGTGCTAATGAAGTGTTTGATGAAATGTGCGAGAGAGGTATTCGGGCTGATAGTTTGACGTTGGGATATGTTGTGTATGGGCTTCTAGCAAAACATAGAGTTAGAGAGGCTTATCAAGTTGTAGAGAAGATTGATGTTGTTGATATAAGTGTTTACCATGGGTTGATAAAAGGGCTTTTGAAGTTGAGAAGAGCAAGTGAAGCAACTCAAGTCTTTAGGGAGATGATAAAGAGAGGCTGCGAACCGAATATGCATACCTATATAATGTTGTTGCAGGGTCATTTGGGGAGGAGAGGAAGGAAAGGGACTGATCCTCTTGTGAATTTTGATACTATTTTTGTTGGTGGCTTGGTGAAAGCTGGACATTCGAAGGAAGCTACTAAGTATGTGGAGAGGGTGATGGATAGAGGGATGGAGGTGCCGAGGTTTGATTATAACAAATTTTTGTATTACTTTTCGAACGAGGAAGGTGCGGTAATGTTTGTGGATGTAGCGAAAAAGTTGCGGGAAGTAGGGTTGATTGATTTGGCAGACATACTTGAGAGATATGGACAGAAGATGGCAACTAGAGATAGGAGGAGGAATAGATTTCCAGTAGTTGAAGATACTAATGTATGA 1506 0.4163 MFLRRTTVLLFKNNLTVPPLRRHLSNPISPVNQDDLLRVCTILYQQQNSPESRLHSKLTSSNFHLTHEFFLQVCNSFPYSWRPVYRFFLFTQQQQEKNPTFTHSSVSFNKMLDVVSKSRNIDLFWSLVNETATRRLANDRTFVIALKTLGGARELKKCLEFFHLMNCNGYGYSLERLNKVVDEMCRVKLVEEAKFVVFKLKDWIKPDGVSYKHLISGFCEKGDLIEASKIWNLMVDEGFVPDVDAVEKFMETFFKVNQFGEALKLFETMRLKRMDELDVSTYRLVIKWLCKKGMVNRANEVFDEMCERGIRADSLTLGYVVYGLLAKHRVREAYQVVEKIDVVDISVYHGLIKGLLKLRRASEATQVFREMIKRGCEPNMHTYIMLLQGHLGRRGRKGTDPLVNFDTIFVGGLVKAGHSKEATKYVERVMDRGMEVPRFDYNKFLYYFSNEEGAVMFVDVAKKLREVGLIDLADILERYGQKMATRDRRRNRFPVVEDTNV* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2934 501 Gene3D Tetratricopeptide repeat domain 344 495 IPR011990 GO:0005515
Psa2g2934 501 Gene3D Tetratricopeptide repeat domain 203 343 IPR011990 GO:0005515
Psa2g2934 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Psa2g2934 501 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Psa2g2934 501 TIGRFAM PPR: pentatricopeptide repeat domain 281 313 IPR002885 -
Psa2g2934 501 TIGRFAM PPR: pentatricopeptide repeat domain 347 379 IPR002885 -
Psa2g2934 501 Pfam PPR repeat family 278 324 IPR002885 -
Psa2g2934 501 Pfam PPR repeat family 344 389 IPR002885 -
Psa2g2934 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Psa2g2934 501 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 22 494 - -
Psa2g2934 501 PANTHER OS07G0599201 PROTEIN 22 494 - -
Psa2g2934 501 Gene3D Tetratricopeptide repeat domain 54 202 IPR011990 GO:0005515
Psa2g2934 501 Pfam PPR repeat 204 235 IPR002885 -
Psa2g2934 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2934 Psa-Chr2 337128864 337130696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2934 209 470 Miscellaneous Gene Families AT4G11690 24.436 3.87e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2934 - - gmx:100810305 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2934 2 337128864 337130696 Psa2g2934 2 337128864 337130696 ECH