Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2909 ATGGAAGAAAAGAGGTTTGTGTGTAGGTATTGTTCACGAAAGTTTCTGTGTGGTAAGTCTCTTGGTGGTCACATAAGGACTCATATGATGAGTGAGAATGAAGAGAGAAGAATGATGAATGCTAATAGTAATGCTGCTGCTTCTATGTTTAAGTTTGATGTTGGAAGAAAGAGAAAGAGATCTGAATTAGGGTCTAGTGGTGTTGGTGGAAGTGGTGGTGGTGGTGATGATGGAAACTACATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCATTCCAATGCTGCTGCTGTTTCTGCTACTGATCAGGAGGAAAGATTCTGCAAGGATTGTGGAAAAAGTTTTTGGTCGTTGAAGGCTTTATGTGGTCACATGGCTTCTCACTCGGATAAAGGCGTGTTGGGTGTCTGTGTCAGAGATAAAGAGAAGTTGGTTATGGATAGTCAGTCGGAAACCGAGGATTCGGTTCCGACTTATACACGGAAATCAAAGAGGATGAAGTTCAAGAATCTTAGCAATGACAACCGGCGCTCTTCGTCTTCGCCTCCGTGGGGAAATTGCTCGTCTTCGATTTCTGAAGTGGATCAAGATCATGAAGAAGTCGCTAGGACTTTGATGATGTTGTCTAGAGATTATTCTTTCAAGGGTTTAGCTTTGGTGACAGAGTCATCTGATAACAACTCTGCTGTTGTTGAACCGAAATTGAAATTGAAATTGAAATTGAAATCGCCTTCTGCTGATACCAAGGTTGTTGCTATGAATCATGATAAGAGCAATGTTGGAAGTGAGAAGAAAGTGTTCAAGGATAAGAGGTTGAGGTATTTAGAAGAAGATTATGATTCTCATAATTCTGATTCTGGTTATTTCCTATATGGTCCTAAAAAAGAAGAAACAGATGATGCTTCAAGCGATTGGTGTTTAAGGAACCGATTTCAGGATCATGATTTTGAATCAAGCAAGAAGATACAAAGCAATAAGAACAACATTCAAAAGGGTTATGAAAGAGATAGTTTCTCAGATGATTCGGTTTATGAGAGCGATGAAAACAGCACTGATAGTGATTCATATGCTGCTCCAAAGGCACAAACCAACAAGAACAACAACATGAATGGAACAAAGATTGGTAACAAGAAGTCAAGTTGCAAAGGGAAGAAGAAAATGAAGTCAAAGAAAAACAAAGAACATGACTGTCCACTTTGTGAGAGGACTTTCAAGTCAGGACAAGCTTTAGGAGGTCACAAAAGATCACATTTTGTTGGAGGCTATGATGAGAGCACTTTTGTCATTAGGCCAAGTGGTTCTGCTGCTCAACCTCAACCTCAAGCTCAACCTCAACCTCAACCTCCTGCCCCGGTTCCGGTTCCGGCTCCGGCTGCTGTTAATCCTTGCTTAATTGATCTTAATCTACCTGCTCCTGATGATGAATAG 1440 0.4062 MEEKRFVCRYCSRKFLCGKSLGGHIRTHMMSENEERRMMNANSNAAASMFKFDVGRKRKRSELGSSGVGGSGGGGDDGNYIYGLRENPKKTTRFVHSNAAAVSATDQEERFCKDCGKSFWSLKALCGHMASHSDKGVLGVCVRDKEKLVMDSQSETEDSVPTYTRKSKRMKFKNLSNDNRRSSSSPPWGNCSSSISEVDQDHEEVARTLMMLSRDYSFKGLALVTESSDNNSAVVEPKLKLKLKLKSPSADTKVVAMNHDKSNVGSEKKVFKDKRLRYLEEDYDSHNSDSGYFLYGPKKEETDDASSDWCLRNRFQDHDFESSKKIQSNKNNIQKGYERDSFSDDSVYESDENSTDSDSYAAPKAQTNKNNNMNGTKIGNKKSSCKGKKKMKSKKNKEHDCPLCERTFKSGQALGGHKRSHFVGGYDESTFVIRPSGSAAQPQPQAQPQPQPPAPVPVPAPAAVNPCLIDLNLPAPDDE* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2909 479 MobiDBLite consensus disorder prediction 353 381 - -
Psa2g2909 479 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Psa2g2909 479 MobiDBLite consensus disorder prediction 177 196 - -
Psa2g2909 479 SMART c2h2final6 110 132 IPR013087 -
Psa2g2909 479 SMART c2h2final6 399 421 IPR013087 -
Psa2g2909 479 SMART c2h2final6 6 28 IPR013087 -
Psa2g2909 479 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 479 - -
Psa2g2909 479 MobiDBLite consensus disorder prediction 445 461 - -
Psa2g2909 479 MobiDBLite consensus disorder prediction 433 461 - -
Psa2g2909 479 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Psa2g2909 479 MobiDBLite consensus disorder prediction 161 176 - -
Psa2g2909 479 ProSitePatterns Zinc finger C2H2 type domain signature. 401 421 IPR013087 -
Psa2g2909 479 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 479 - -
Psa2g2909 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Psa2g2909 479 MobiDBLite consensus disorder prediction 322 399 - -
Psa2g2909 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Psa2g2909 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 421 IPR013087 -
Psa2g2909 479 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Psa2g2909 479 MobiDBLite consensus disorder prediction 152 197 - -
Psa2g2909 479 Pfam C2H2-type zinc finger 399 421 - -
Psa2g2909 479 Pfam C2H2-type zinc finger 112 134 - -
Psa2g2909 479 Pfam C2H2-type zinc finger 5 29 - -
Psa2g2909 479 SUPERFAMILY beta-beta-alpha zinc fingers 111 421 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2909 Psa-Chr2 335855530 335858369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2909 1 479 C2H2 Transcription Factor Family AT1G26610 36.872 3.97e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g2909 zf-C2H2_6 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2909 - - cam:101498129 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2909 2 335855530 335858369 Psa2g2909 2 335855530 335858369 ECH