Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2871 ATGTGGAGCCTTGGATTCATTGATTTGATTAGGGTTTCTATTTTGTTGGCTTTTGCGACTGTGATCTCTTCTCTGGAACCCCATCTGGGATCAACCCGCGTCGTTTTTCAGACAAATTACGGAGACATTGAATTTGGTTTCTATCCAACTGTTGCACCCAAAACTGTTGACCACATTTTTAAGCTTGTGAGACTTGGCGGCTATAACACCAATCACTTCTTTCGGGTGGATAAGGGTTTTGTAGCCCAAGTAGCTGATGTTGCAAATGGAAGATCTGCCCCCATGAATGAGGAACAAAGAAGAGTAGCTGAAAAGAACGTTGTTGGTGAATTTAGTGATGTCAAGCATGTTCGAGGCATTCTTTCCATGGGAAGGCATGACGATCCAGATAGTGGCGGATCCTCTTTTTCAATGTTACTTGGAGATTCTCCTCATCTTGATGGGAAGTATGCAATATTTGGAAAAGTTACAAAAGGCGACGATACATTGGCGAAGCTTGAGCAACTACCTACTCGTAAAGAGGGAATATTTGTAATGCCAACGGAGCGCATCACCATCCTCTCATCATATTACTATGATACGGAGATAGAAAATTGTGAGCAAGACAGATCGATTTTGAAGCTCAGGTTAGCTGCATCGGCTGTTGAAGTTGAAAGACAGAGAATGAAATGCTTCCCCTAA 681 0.4258 MWSLGFIDLIRVSILLAFATVISSLEPHLGSTRVVFQTNYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVANGRSAPMNEEQRRVAEKNVVGEFSDVKHVRGILSMGRHDDPDSGGSSFSMLLGDSPHLDGKYAIFGKVTKGDDTLAKLEQLPTRKEGIFVMPTERITILSSYYYDTEIENCEQDRSILKLRLAASAVEVERQRMKCFP* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2871 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 21 226 IPR044233 -
Psa2g2871 226 Gene3D - 22 200 IPR029000 -
Psa2g2871 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Psa2g2871 226 CDD cyclophilin 35 188 - -
Psa2g2871 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 21 226 - -
Psa2g2871 226 SUPERFAMILY Cyclophilin-like 28 194 IPR029000 -
Psa2g2871 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Psa2g2871 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Psa2g2871 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Psa2g2871 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Psa2g2871 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2871 Psa-Chr2 333615273 333620295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2871 34 192 U-box Gene Family AT5G67530 29.193 3.86e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2871 - - gmx:100819238 386.726