Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2870 ATGTGGAGCCTTGAGATTAGGGTTTGTATTTTGCTGGCTTTTGCGTTTGTTATTTCTTCTCTCGAACCCAAACTCGGATCAACCCGCGTCGTCTTTCAGACAAATTACGGAGACATTGAATTTGGTTTCTATCCAACTGTTGCACCCAAAACGGTTGACCACATTTTTAAGCTTGTGAGACTTGGAGGCTATAACACCAATCACTTCTTTCGGGTGGATAAGGGGTTTGTAGCCCAAGTAGATGATATTACAAATGGAAGATCTGCTCCCATGAATGAGGAACAAAGAAGAGTAGCTGAAAAGACTGTTGTTGGTGAATTTAGTGATGTCAAACATGTTCGCGGCATTCTTTCCATGGGAAGGTTTGACGACCCTGATAGTGGTGGATCCTCTTTTTCAATGTTACTTGGAAATTCTCCTCATCTTGATGGGAAGTATGCAATATTTGGAAAAGTTACAAAAGGCGACGATACTTTGACAAAGCTTGAGCAGCTACCTACTCGTAAAGAGGGAATATTTGTAATGCCAAAGGAGCGCATCACCATCCTCTCATCATATTACTATGATACGGAGACAGAAAATTGTGAGCAAGATAAATCAATTTTGAAGCTCAGGTTAGCTGCATCGGCCGTTGAAGTTGAAAGACAGAAAATGAAATGCTTCCCCTAA 669 0.4126 MWSLEIRVCILLAFAFVISSLEPKLGSTRVVFQTNYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVDDITNGRSAPMNEEQRRVAEKTVVGEFSDVKHVRGILSMGRFDDPDSGGSSFSMLLGNSPHLDGKYAIFGKVTKGDDTLTKLEQLPTRKEGIFVMPKERITILSSYYYDTETENCEQDKSILKLRLAASAVEVERQKMKCFP* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2870 222 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 9 222 IPR044233 -
Psa2g2870 222 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 31 187 IPR002130 GO:0000413|GO:0003755
Psa2g2870 222 SUPERFAMILY Cyclophilin-like 23 189 IPR029000 -
Psa2g2870 222 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 184 IPR002130 GO:0000413|GO:0003755
Psa2g2870 222 Gene3D - 18 196 IPR029000 -
Psa2g2870 222 CDD cyclophilin 31 184 - -
Psa2g2870 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 IPR002130 GO:0000413|GO:0003755
Psa2g2870 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 IPR002130 GO:0000413|GO:0003755
Psa2g2870 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Psa2g2870 222 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2870 Psa-Chr2 333602876 333614791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2870 30 188 U-box Gene Family AT5G67530 28.743 1.19e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2870 - - gmx:100819238 372.474