Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2850 ATGAATGATATAAACGAGAGGCGAGAACAACATAAACTATTCCGGATAAATATCAAACTAGTCTCAAAGATCGACGGGAAAGAGTTGACTAACTACTTGAGCAGAGAAGGCGATGACGGGATTCCACTTCCACAGCATTATCTACATGCATTGGATGTAATTTTGAGGGAAAGTCCGACGGAGAAATGTATACCGGTAGGAAGGTCATTCTTTTCGAGTTCAATGGGGAGAGGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCGACGCAACAAGGACTTGCTCTCAATGTAGATTTTTCAGTAACCGCTTTCCATGAGAGTATCGGAGTTATTCCGTATTTGCAGAAGCGTCTCGAGTTTTTCAAAGACCTTTCTCAAAGGAAGGCAACTGAGCTAACTTGCGAAGAAAGAAAGGATGTGGAGAAAGCGTTGAAGAATATCAGAGTCTTTGTTTGCCATAGAGAAACCGTTCAGAGATACCGTGTCTATGGTTTAACCGAAGAGGCAACTGAAAACCTTTGGTTTCCTGATAGAGATGGAACGAATTTGAGGCTTATGAGTTACTTTAAAGATCACTATAACTATGACATACAATTCAGGAAGTTACCATGCTTGCAAATTAGTAGGAGCAAACCTTGTTATCTTCCTATGGAGCTTTGTGTGATCTGTGAAGGACAGAAGTTCCTCGGGAAACTTTCGGATGATCAGACGGCAAAAATACTCAAGATGGGCTGTCAAAGACCGGGAGAGCGAAAAACCATCATTGAAGGCGTCATGAAAGGAAATGTCGGTCCTACGAGTGGTGACCAGGAAAAGGAATTCAAACTTCAAGTCTCAAGAGAAATGACGAGGTTGACCGGTAGAATTCTTTACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCAAGTGAGAAACCTGACTCCTTCACGTCATGATCGCCAATGGAACTTTCTAGATGGCCATGTTTTTGAAGGAACTACGATCGAAAGATGGGCACTAATAAGTTTTGGAGGCACACCCGAGCAAAAATCCTATATCCCAAGATTCGTAAACCAGTTAACTCAAAGATGTGAACAATTAGGCATTTTTCTTAACAAGAACACAGTTATTAGTCCGCAGTTTGAATCAAGTCACGTTCTTAACAACGTCACGCTTTTGGAATCTAAGCTCAATAGAATCCAAAGGGTTGCGTCAAACAACCTGCAGCTTCTTATTTGTGTAATGGAGAAAAAACACAAAGGCTATGGAGACTTGAAACGAATTGCTGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGTCTGTATCCGAATCTTGTCAAGTTAAGTTCACAGTTTTTGGCTAATTTGGCTCTCAAGATCAATGCTAAAGTCGGTGGATGCACGGTTGCTTTGTACAACTCGCTTCCTTCTCAATTACCGCGTCTTTTTAGCATCGACGAGCCGGTGATGTTCATGGGAGCTGATGTAACACATCCTCATCCTCTTGATGATTCGAGTCCATCTGTCGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAATACATTTCAAGAATAAGATCTCAAACACATAGACAAGAAATCATCGCCGATCTCGGCGCAATGGTTGGAGAATTGCTTGACGATTTTTATCAGGAAGTTGAAAAACTCCCCGGCCGAATAATTTTCTTCCGAGACGGTGTTAGTGAAACTCAATTCCACAAAGTGCTCGACGAGGAACTACAATCCATAAAACAAGCATGTTCATCAAGGTTTCATGGCTATAAACCTTTTATCACTTTCGTAGTTGTGCAAAAGAGGCATCACACAAGGTTGTTTCCCGACGAAACCGATCAGTCTTCAACACACAACAACTTTCATTTTCAATACGAAAATATTCCTCCAGGAACCGTGGTTGATTCCGTGATCACTCATCCGAAGGAATTTGATTTTTATCTGTGTAGCCATTGGGGTGTGAAGGGAACAAGTAGGCCAACTCATTATCATGTTTTGTGGGACGAAAACAAGTTTACTTCAGATGAACTCCAGAAGCTTGTTTACAATTTGTGCTTTACTTTTGTTAGGTGCACTAAGCCAATTTCATTGGTTCCTCCTGCATATTATGCGCATTTAGCTGCATATCGAGGTAGACTTTACCTTGAGAGATCTGAGTCATTAGGTTTATTCAGAAGCAGTTCTACATTATCAAGAGCTGCTCCTCCAAAGACACCACCTCTACCTAAACTTAGTGAAAACATCAAGAAGCTTATGTTTTACTGCTAG 2295 0.4161 MNDINERREQHKLFRINIKLVSKIDGKELTNYLSREGDDGIPLPQHYLHALDVILRESPTEKCIPVGRSFFSSSMGRGKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFFKDLSQRKATELTCEERKDVEKALKNIRVFVCHRETVQRYRVYGLTEEATENLWFPDRDGTNLRLMSYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTAKILKMGCQRPGERKTIIEGVMKGNVGPTSGDQEKEFKLQVSREMTRLTGRILYPPKLKLGDGGQVRNLTPSRHDRQWNFLDGHVFEGTTIERWALISFGGTPEQKSYIPRFVNQLTQRCEQLGIFLNKNTVISPQFESSHVLNNVTLLESKLNRIQRVASNNLQLLICVMEKKHKGYGDLKRIAETSVGVVSQCCLYPNLVKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFSIDEPVMFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIADLGAMVGELLDDFYQEVEKLPGRIIFFRDGVSETQFHKVLDEELQSIKQACSSRFHGYKPFITFVVVQKRHHTRLFPDETDQSSTHNNFHFQYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENKFTSDELQKLVYNLCFTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSSSTLSRAAPPKTPPLPKLSENIKKLMFYC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2850 764 CDD Piwi_ago-like 281 724 IPR045246 -
Psa2g2850 764 SMART DUF1785_2 64 116 IPR014811 -
Psa2g2850 764 Gene3D - 298 474 - -
Psa2g2850 764 ProSiteProfiles PAZ domain profile. 124 233 IPR003100 GO:0005515
Psa2g2850 764 SUPERFAMILY PAZ domain 111 269 IPR036085 GO:0005515
Psa2g2850 764 SUPERFAMILY Ribonuclease H-like 396 725 IPR012337 -
Psa2g2850 764 PANTHER PROTEIN ARGONAUTE 7 6 763 - -
Psa2g2850 764 Pfam Piwi domain 413 722 IPR003165 GO:0003676
Psa2g2850 764 SMART Piwi_a_2 412 725 IPR003165 GO:0003676
Psa2g2850 764 Pfam PAZ domain 127 249 IPR003100 GO:0005515
Psa2g2850 764 Gene3D - 484 764 IPR036397 GO:0003676
Psa2g2850 764 SMART PAZ_2_a_3 124 264 IPR003100 GO:0005515
Psa2g2850 764 CDD PAZ_argonaute_like 127 232 - -
Psa2g2850 764 ProSiteProfiles Piwi domain profile. 412 725 IPR003165 GO:0003676
Psa2g2850 764 Pfam Argonaute linker 1 domain 65 114 IPR014811 -
Psa2g2850 764 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 763 - -
Psa2g2850 764 Gene3D paz domain 110 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2850 Psa-Chr2 329937265 329940902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2850 6 764 Eukaryotic Initiation Factors Gene Family AT1G48410 43.127 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2850 K11593 - gmx:100797755 1389.79