Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2843 ATGACCACCGAAGAACCCATCATCGCCGTTGAACCCGTGTCCGAACCAGCAACCGCCGAACCTCCGGACTTGGAGGAAGTTGATGAACCAAAGGCCGAAGCTGAGAAGATGAAGAAAGTCAAGGAAACCGAACCTAAGAAAGATTCCAAAACACGAAACCTTGCTTCCCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGATTGTTGGTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCGTTCAAGCTTTCTGCAGCAGCTAAGAAGCCAGCAGTTGCCAAGCCAAAGTCAAAACCAGGCCCTGAACCTACCAGGGCGGAGTTGGTCCCTGCCTATGTCCGATTGCTTCGAGATAATGAGGCTGAGGTACGCATAGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATTTTAAGTCCCGATCTTGCAATTCAGCATACTCTTCCTTGTGTCAAGGAATTGTCATCGGATTCTTCACAACATGTTCGCTCAGCTCTGGCTTCAGTAATAATGGGAATGGCTCTAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTATCCCTTCTGAAGGATGAATTTCCTGATGTTCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATTAG 762 0.4554 MTTEEPIIAVEPVSEPATAEPPDLEEVDEPKAEAEKMKKVKETEPKKDSKTRNLASHPTYEEMIKDAIVSLKEKNGSSQYAIVKFIKEKQKQLPGNFKKLLLQNLKKIVGSGKLAKVKGSFKLSAAAKKPAVAKPKSKPGPEPTRAELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPDLAIQHTLPCVKELSSDSSQHVRSALASVIMGMALVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2843 253 ProSiteProfiles HEAT repeat profile. 187 225 IPR021133 -
Psa2g2843 253 SUPERFAMILY ARM repeat 138 251 IPR016024 -
Psa2g2843 253 SUPERFAMILY "Winged helix" DNA-binding domain 55 133 IPR036390 -
Psa2g2843 253 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g2843 253 Gene3D - 51 134 IPR036388 -
Psa2g2843 253 Gene3D - 135 252 IPR011989 -
Psa2g2843 253 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa2g2843 253 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa2g2843 253 ProSiteProfiles HEAT repeat profile. 226 253 IPR021133 -
Psa2g2843 253 CDD H15 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g2843 253 ProSiteProfiles HEAT repeat profile. 148 186 IPR021133 -
Psa2g2843 253 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 140 253 - -
Psa2g2843 253 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT A 140 253 - -
Psa2g2843 253 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa2g2843 253 MobiDBLite consensus disorder prediction 29 55 - -
Psa2g2843 253 MobiDBLite consensus disorder prediction 1 59 - -
Psa2g2843 253 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2843 Psa-Chr2 329437448 329438670 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2843 48 178 Single Myb Histone (SMH) Gene Family AT1G72740 28.030 1.85e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2843 K03456 - gmx:100811658 213.001