Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2828 ATGAGTCGTAAGAGAGACAGCCCCTACTTTTCCCGCCACGACTTCAAGCGCCGCCGTCCACTGCCGGAGCCAGCGGAGGAAGAAAGACCCACCACCAGGCCGACGCCTCCTTCTGCGGTAGTCGTCATGGGTCTCCCTCTTGACTGCTCCGTCCTCGATCTCAAGTCTCGATTTGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATAACCTTCCGGAATAAAGACTCGGCCGACGCCGCCATCGCCGCTGGCCACGACCCTTCCTTTGGCGTCACCGTCAATTCCAAAGAGGTTCAGGTGTTATGCGCAACGGATCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAGTGTCTCTATGTCAAAGCTTGTGCGAGCTGATGTACCTTTGAGGAGACATGGAAGAAGTAATAAACTTGCTTCAGCTATAGGGAATACCAAAAGTAGTAACGATGGTTCTGGTAGCTTGGTTCTTGAAGTTCCTTCCAGAGGTAGAGAAATTGTTGCTTATGATGATATAATGTAA 558 0.5197 MSRKRDSPYFSRHDFKRRRPLPEPAEEERPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITFRNKDSADAAIAAGHDPSFGVTVNSKEVQVLCATDPLAMWREGVGKNKDSVSMSKLVRADVPLRRHGRSNKLASAIGNTKSSNDGSGSLVLEVPSRGREIVAYDDIM* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2828 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Psa2g2828 185 MobiDBLite consensus disorder prediction 1 30 - -
Psa2g2828 185 SUPERFAMILY RNA-binding domain, RBD 18 94 IPR035979 GO:0003676
Psa2g2828 185 Gene3D - 2 114 IPR012677 -
Psa2g2828 185 MobiDBLite consensus disorder prediction 1 37 - -
Psa2g2828 185 CDD RRM_SF 40 108 - -
Psa2g2828 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Psa2g2828 185 SMART rrm1_1 39 109 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2828 1 185 Homeobox Transcription Factor Family AT1G27050 51.707 5.71e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2828 - - gmx:106797175 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2828 2 328436622 328438056 Psa2g2828 2 328436622 328438056 ECH