Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2825 ATGGCAGGTGCCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATCAAACTCTCCCTTCTTCCTCCAATGAAGTCCTTGAATCTCTTTGGGTTCATACCTCTAACCCTGCCTCTTTTCAAGGTTCAAAGACAATAGTTGATTTTGAGAATGTTGGAAGTGGAAGCAGGGTGGTAACAGATATACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGTTTTCATCAACAAGGAAAGAAAAGGAGACTCTCAAGTGAACAAGTTCAGTTTCTTGAAAGAAGTTTTGAGGTTGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCTAAAGATCTTGGTTTACAACCAAGACAAGTTGCTATATGGTTCCAAAATAGAAGAGCAAGGTTCAAAACCAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCTAGCTTTGATAGACTCAAAGATGATTATGATAATCTTGTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAACTCTTTGAAGAAAAAAGTGATTCCAATAGATAAAGAGAATTCAGAAGAAGCTATCAACAAAGAACCTATGGACTTAACCTCAAATGAAAATTCAGAAAATGGGTCCAAAGTGTCATTCCCAAATATGGTACTAAACTGTAAACATGAAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGTGAACAATCTTTCTTCATTCATGGAGCCTACTACAGATTCTTCACATGTTTTCGAACCCGATCACTCCGATTTCTCGCAAGACGAAGAAGATAACGATGATTTGAGCGATAATCTTTTGACTCTTCCAAAGATCGAAGATGTTTGCTACGACGACCCTCGTGAAAATTCTTGTAATTTCGGGTTTCCGGCTGAAGATCAAACCTTTTGTTTCTGGCCTTACTCAATTTAA 975 0.3713 MAGAKLFGGSNMSLLLQNQTLPSSSNEVLESLWVHTSNPASFQGSKTIVDFENVGSGSRVVTDIPFFQQLEKEENCGDEDYEACFHQQGKKRRLSSEQVQFLERSFEVENKLEPDRKVQLAKDLGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDRLKDDYDNLVQENDKLKEEVNSLKKKVIPIDKENSEEAINKEPMDLTSNENSENGSKVSFPNMVLNCKHEDANSAKSDVLDSDSPHCNDVNNLSSFMEPTTDSSHVFEPDHSDFSQDEEDNDDLSDNLLTLPKIEDVCYDDPRENSCNFGFPAEDQTFCFWPYSI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2825 324 Gene3D - 93 139 - -
Psa2g2825 324 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Psa2g2825 324 SMART HOX_1 88 149 IPR001356 GO:0003677
Psa2g2825 324 Coils Coil 158 185 - -
Psa2g2825 324 Gene3D - 140 191 - -
Psa2g2825 324 CDD homeodomain 90 146 IPR001356 GO:0003677
Psa2g2825 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 322 IPR045224 GO:0003700
Psa2g2825 324 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Psa2g2825 324 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Psa2g2825 324 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Psa2g2825 324 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Psa2g2825 324 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Psa2g2825 324 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Psa2g2825 324 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2825 Psa-Chr2 327702222 327704331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2825 90 248 Homeobox Transcription Factor Family AT3G01470 49.112 1.21e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa2g2825 Homeodomain 9.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2825 - K09338 gmx:100804328 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2825 2 327702222 327704331 Psa2g2825 2 327702222 327704331 ECH