Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2813 ATGATAATTGGCGGCAATACAGTAAGAAGGAATCTAGGGGAAGAAAAACTAGGAAGAGGACGTCCATGTGTGGCTACAAACCCCATTGATAGGTGTTGGAGGTGCGATCCTAATTGGAATACTAACCACAAGAAGCTGGCAGATTGTGTGCAAGGTTTTGGTAGGAATACTACTGGTGGAAAAGACGGACCTATCTATGTGGTAACTGATCCCTCAGATGATGACATGCAAAATCCCCGTCCTGGTACGCTTCGATATGCAGTTACAAGAAATAGACCTTTATGGATCATCTTTGCTCATAGCATGGTCATTAGGCTCAACCAGGAACTCATAATGACAAGTGATAAGACCATTGATGGACGAGGATCTAATGTTATCATTGCTAGAGGTGCTGGTGATGTTGTTTGGTGCAACCAACATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCACCTAATAACCCCAATGCTAAAGAGATAACAAAGAGGGGTTACGCACCCGAATCGGAGTGGAAAAATTGGCAATGGAGATCAATCAATGATGTCTATATGAATGGAGCATTTTTCAGACAAGGAGGATCCGCACTGACTAATAGACTATTCTCAAAAAAGGACATGATCAAATCTAGACCTGGAACTTATGTGGGAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCAGAGCAGGGCAACCTTGTTAG 705 0.4284 MIIGGNTVRRNLGEEKLGRGRPCVATNPIDRCWRCDPNWNTNHKKLADCVQGFGRNTTGGKDGPIYVVTDPSDDDMQNPRPGTLRYAVTRNRPLWIIFAHSMVIRLNQELIMTSDKTIDGRGSNVIIARGAGDVVWCNQHPTIISEGNRFIAPNNPNAKEITKRGYAPESEWKNWQWRSINDVYMNGAFFRQGGSALTNRLFSKKDMIKSRPGTYVGRLTRYSGSLRCRAGQPC* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2813 234 SUPERFAMILY Pectin lyase-like 27 129 IPR011050 -
Psa2g2813 234 PANTHER PECTATE LYASE 18-RELATED 2 134 IPR045032 GO:0030570
Psa2g2813 234 PANTHER PECTATE LYASE 18-RELATED 138 234 IPR045032 GO:0030570
Psa2g2813 234 SUPERFAMILY Pectin lyase-like 137 234 IPR011050 -
Psa2g2813 234 PANTHER PECTATE LYASE 138 234 - -
Psa2g2813 234 PANTHER PECTATE LYASE 2 134 - -
Psa2g2813 234 PRINTS Pollen allergen Amb family signature 49 66 IPR018082 -
Psa2g2813 234 PRINTS Pollen allergen Amb family signature 73 98 IPR018082 -
Psa2g2813 234 PRINTS Pollen allergen Amb family signature 109 125 IPR018082 -
Psa2g2813 234 Gene3D - 135 227 IPR012334 -
Psa2g2813 234 Gene3D - 26 134 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2813 Psa-Chr2 326560358 326562606 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2813 138 234 Polysaccharide Lyase AT1G14420 50.000 2.58e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2813 K01728 - gmx:100798579 202.216