Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2811 ATGGCAAAATTGTACCATCTCTTCCTTTTTACTATTTTAGTGGTAATCATACCTACATTAGTGCATGCTAATGTTAAAGAGCAAGAGACGTATTGGAAAAACCTACTTCCATACATTAATGATACATATTGGCAGGAAAAAGCAGCAAAAGCTGAAGAAACAAACAACATAGCTTATACACCTGACCCATATGCAGTCTCGGAAAATCTGACTTCTGTTGTTAGCGAAATGATAGTTGACGAAAATACAGGAAGAAGGAACCTAGGAGAAAAAAAATTAAGAAGAGGTCATCCATGTATGGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCCTAATTGGGCAAAGAACCGCAAGAAGCTTGCAGATTGTGCACAAGGTTTTGGAAGGAAGGCTACTGGTGGAAAAGCCGGTCCTATCTATGTGGTAACCGAACCCTCAGATAATGACATGGTTAATCCACGTCCAGGAACCCTTAGACATGCAGTTACAAGAAATGGACCTTTGTGGATCATTTTTGCTCGTAGCATGGTCATTAGGCTCAACCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAACTACTGTTGTCATTGCTAAAGGTGCTGGGATTACTATCCAGTTTATCAATAACGTGATGTTATTTGGTGCAACTGATGGCTATGACGGTGATAAGAAAATGCAAGTCACGCTTGCATTCAACCATTTTGGTAAGAGATTAATTCAAAGGATGCCAAGGGTTAGATATGGTTTTGTCCATGTGCTTAATAATGACTACACTCATTGGGAAATGTATGCAATTGGTGGTAGTCAAAATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCTCCTAACAATCCTCATGCTAAAGAGATAACAAAGCGAGGTGCATCAGAGGGAGAGTGGAAAAATTGGCAATGGAAATCAATCAATGACGTCTATATGAACGGAGCATTTTTCAGACAAACTGGACCTTTGCTGACTAACAGACCATTCTCAAAAAAGGATATGATCAAAGCTAGGCCTGGAACTTATGTGGGAAGGTTGACTCGTTTTTCTGGTAGTCTTAGATGCAGACCTGGAAAGGCTTGTTAG 1113 0.4043 MAKLYHLFLFTILVVIIPTLVHANVKEQETYWKNLLPYINDTYWQEKAAKAEETNNIAYTPDPYAVSENLTSVVSEMIVDENTGRRNLGEKKLRRGHPCMATNPIDRCWRCDPNWAKNRKKLADCAQGFGRKATGGKAGPIYVVTEPSDNDMVNPRPGTLRHAVTRNGPLWIIFARSMVIRLNQELIMTSDKTIDGRGTTVVIAKGAGITIQFINNVMLFGATDGYDGDKKMQVTLAFNHFGKRLIQRMPRVRYGFVHVLNNDYTHWEMYAIGGSQNPTIISEGNRFIAPNNPHAKEITKRGASEGEWKNWQWKSINDVYMNGAFFRQTGPLLTNRPFSKKDMIKARPGTYVGRLTRFSGSLRCRPGKAC* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2811 370 Pfam Pectate lyase 210 287 IPR002022 -
Psa2g2811 370 Gene3D - 102 216 IPR012334 -
Psa2g2811 370 Gene3D - 217 363 IPR012334 -
Psa2g2811 370 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Psa2g2811 370 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Psa2g2811 370 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Psa2g2811 370 PANTHER PECTATE LYASE 18-RELATED 215 370 IPR045032 GO:0030570
Psa2g2811 370 PANTHER PECTATE LYASE 18-RELATED 6 218 IPR045032 GO:0030570
Psa2g2811 370 SUPERFAMILY Pectin lyase-like 123 369 IPR011050 -
Psa2g2811 370 SMART amb_all 177 293 IPR002022 -
Psa2g2811 370 Pfam Pectate lyase, N terminus 40 88 IPR007524 GO:0030570
Psa2g2811 370 PANTHER PECTATE LYASE 215 370 - -
Psa2g2811 370 PANTHER PECTATE LYASE 6 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2811 Psa-Chr2 326195352 326197873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2811 5 370 Polysaccharide Lyase AT1G14420 42.950 1.48e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2811 K01728 - atr:18421547 324.324