Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2810 ATGGCAAAATTGTATCATCTCTTCCTTTTGACCATTTTAGTGGTAATCATACCTACGTTAGTGCATGCTAATGTTAAAGAGCAAGACTCATATTGGGAAAATCTACTTCCATACATTAATGATACATATTGGCGGGAAAAAGCAGCAAAAGCTGAAGAAACAAACAACATAGCTTATACACCTGACCCATATGCAGTTTCTGAAAATCTGACTTCTGTTGTTAGCGAAATGATAGTTGGCGAAAGTACAGGAAGAAGGAAGTTGGCAGGAAAAAAACTAAGAAGAGGTCATCCATGTATCGCTACAAACCCCATTGACAGGTGTTGGAGGTGTGATCCTAATTGGGCAACGAATCGCAAGAAGCTTGCAGATTGTGCACAAGGTTTTGGAAGGAAGGCTATTGGTGGAAAAGCCGGTCCTATATATGTGGTAACCGAATCCTCAGATAATGACATGGTTAATCCACGTCCAGGTACCCTTAGGTATGCAGTTACAAGAAATGGACCTTTGTGGATCATCTTTGCTCGTAGCATGGTCATTAGACTTAGCCAAGAACTTATAATGACAAGTGACAAGACCATTGATGGGCGAGGTACTACTGTTGTCATTGCTAAAGGTGCCGGGATTACTATTCAATTTATCAATAATGTGATCATTCACGGGATTAAAATTTTTGACATTACGGTGATGTTATTTGGTGCAACTGATGGCTATGACGGTGATAAGAAAATGCATCAGTGCGAACTTTCCTACCCAAGGGTTAGATATGGTTTTGTCCATGTGCTTAATAATGACTACACTCATTGGGAAATGTATGCAATTGGTGGTAGTAAAAATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCTCCTAACAATCCTCATGCTAAAGAGATAACAAAGAGAGGTGCATCAGAGGGAGAGTGGAAAAATTGGCAATGGAAATCAATCAATGACGTCTATATGAACGGAGCATTTTTCAGACAAACTGGACCTTTGCTGACTAACAGACCATTCTCAAAAAAGGATATGATCAAAGCTAGGCCTGGAACTCATGTGGGAAGGTTGACTCGTTTTTCTGGCAGTCTTAGATGCAGACCTGGAAAGGCTTGTTAG 1119 0.403 MAKLYHLFLLTILVVIIPTLVHANVKEQDSYWENLLPYINDTYWREKAAKAEETNNIAYTPDPYAVSENLTSVVSEMIVGESTGRRKLAGKKLRRGHPCIATNPIDRCWRCDPNWATNRKKLADCAQGFGRKAIGGKAGPIYVVTESSDNDMVNPRPGTLRYAVTRNGPLWIIFARSMVIRLSQELIMTSDKTIDGRGTTVVIAKGAGITIQFINNVIIHGIKIFDITVMLFGATDGYDGDKKMHQCELSYPRVRYGFVHVLNNDYTHWEMYAIGGSKNPTIISEGNRFIAPNNPHAKEITKRGASEGEWKNWQWKSINDVYMNGAFFRQTGPLLTNRPFSKKDMIKARPGTHVGRLTRFSGSLRCRPGKAC* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2810 372 SUPERFAMILY Pectin lyase-like 97 366 IPR011050 -
Psa2g2810 372 Gene3D - 102 243 IPR012334 -
Psa2g2810 372 Gene3D - 244 347 IPR012334 -
Psa2g2810 372 PANTHER PECTATE LYASE 6 229 - -
Psa2g2810 372 PANTHER PECTATE LYASE 229 372 - -
Psa2g2810 372 SMART amb_all 177 295 IPR002022 -
Psa2g2810 372 Pfam Pectate lyase, N terminus 40 88 IPR007524 GO:0030570
Psa2g2810 372 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Psa2g2810 372 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Psa2g2810 372 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Psa2g2810 372 PANTHER PECTATE LYASE 18-RELATED 6 229 IPR045032 GO:0030570
Psa2g2810 372 PANTHER PECTATE LYASE 18-RELATED 229 372 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2810 Psa-Chr2 326180220 326182301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2810 7 372 Polysaccharide Lyase AT1G14420 42.484 5.24e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2810 K01728 - tcc:18610480 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2810 2 326180220 326182301 Psa2g2810 2 326180220 326182301 ECH
Psa2g2810 2 326180220 326182301 Psa1g1727 1 122902730 122906408 ECH