Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2807 ATGGGAAGAGCAGCAAGAGCTCAAAAGACAAATGACGAAGCTTATACTCCTGACCCATATGCAGTCTCCGGAAACATGACTTCTAGTGTTAGCGAAATGATAATTGACGGCAATAAAGGAAGAAGGAATTTAATGGGGAAAAAACTAGCCAATGGCGGTCCATGTATGGCTACAAACCCCATTGACAGATGTTGGAGGTGTGATCCTAACTGGGCAAATAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAAACTACTGGAGGAAAAGCTGGTCCTATCTATGTGGTAACTGACCCCTCGGATAATGACATGGTTCATCCACATCCAGGTACTCTTAGGCATGCAGTTACAAGAAATGGACCTTTGTGGATTATCTTTGCCCATAGCATGAACATTAGGCTCAGCCAAGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGAGCTCATGTTATCATTGCTAATGGAGCTGGTATTACTATCCAGTTCATCAATAATGTGATGTTGTTTGGTGCAAGTGATGGCTATGATGGTGATCAGAAAATGCAGATCACAGTTGCATTCAACCACTTCGGTAAGAGATTAATCCAAAGGATGCCAAGGTGTAGATATGGTTTTGTCCATGTACTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGTAAACATCCTACTATTATAAGCGAGGGTAACCGATTCATAGCCCCCAACAACGGCTATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAGGAAGAATGGAAAAAGTGGCAATGGAGATCAATCGACGATGTGTATATGAACGGAGCATTTTTCAGACAAGCTGGACCTGAGCTGACTAACAGACCATTCTCAAGAAAAGACATGATCAAAGCTAGGCCTGGAACTTTCGTGGGAAGGCTTACTCGTTATTCTGGCAGCCTTAAATGCATAGTGGGGAAGCCTTGTTAG 984 0.4299 MGRAARAQKTNDEAYTPDPYAVSGNMTSSVSEMIIDGNKGRRNLMGKKLANGGPCMATNPIDRCWRCDPNWANNRKKLADCVQGFGRKTTGGKAGPIYVVTDPSDNDMVHPHPGTLRHAVTRNGPLWIIFAHSMNIRLSQELIMTSDKTIDGRGAHVIIANGAGITIQFINNVMLFGASDGYDGDQKMQITVAFNHFGKRLIQRMPRCRYGFVHVLNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNGYAKEITKREYSPEEEWKKWQWRSIDDVYMNGAFFRQAGPELTNRPFSRKDMIKARPGTFVGRLTRYSGSLKCIVGKPC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2807 327 SUPERFAMILY Pectin lyase-like 79 327 IPR011050 -
Psa2g2807 327 SMART amb_all 133 249 IPR002022 -
Psa2g2807 327 PANTHER PECTATE LYASE 18-RELATED 7 174 IPR045032 GO:0030570
Psa2g2807 327 PANTHER PECTATE LYASE 18-RELATED 171 327 IPR045032 GO:0030570
Psa2g2807 327 Pfam Pectate lyase 166 243 IPR002022 -
Psa2g2807 327 Gene3D - 58 173 IPR012334 -
Psa2g2807 327 Gene3D - 174 320 IPR012334 -
Psa2g2807 327 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Psa2g2807 327 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Psa2g2807 327 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Psa2g2807 327 MobiDBLite consensus disorder prediction 1 22 - -
Psa2g2807 327 PANTHER PECTATE LYASE 7 174 - -
Psa2g2807 327 PANTHER PECTATE LYASE 171 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2807 Psa-Chr2 325795750 325800369 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2807 55 317 Polysaccharide Lyase AT3G54920 42.433 1.12e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2807 K01728 - gmx:100796307 296.204