Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2806 ATGGACTTGTTGGCACAATCCTGTACAGCCACGGCTACCAACCCAATCTCAGTCTCAAACCACTCTTTCATCACTCCCAGGAAACTCATTTCTTCGAGGCGCGTGGCTCCCACTTTCTGCTCCAGTCTTCCACAATTCTCTTTCACATCTAGCCACCCAGAGCGTGTACAACCGAAACCGATACTGAAACCATTTCCTTCACCACAGCCTCAACGCCCTCAACCTTCTCCGTCACCTGCTACTTTTCATAAAACAGCAGTTGTAAAATTGCCAGCTAGGGTTTATGTTGGCCATTCACTTTACAAAGGGAAAGCTGTACTCACTGTGGCTCCTAGACCTCCCGAATTCACTTCATTAGATTCAGGGGCGTTCAAGATATCCAGACAAGGTTGTGTGCTGCTCCAATTTGCTCCTTCGGTTCTTCCGTTTCAATATGATTGGACCAAAAAACAGGTATTTTCGTTGTCAGTGGGAGAAATTGGAATTCTAATCAACCTTGGTGCAAAGGAGACTTGTGAATTTTATCATGACCCTTTTTTGGGAAAAAGTGATGAAGGTCAAGCGAGAAAAGTTTTGAAGGTGGAGCCACTTCACGACGGTTCTGGTCACATGTTTAACCTCAGTGTTGTAAACAAGCCTGAAAACCTAAACGAAAACATCTTTATCCCTGTCACAAAAGCTGAGTTTGCAATTTTCAAATCACTTTTCAGTTTTATCATGCCATGCCTTTTAGGTTGGAATGCCTTTGGTAGCTCTATAAAGCCAGAAGTAAATATTGCAAGCCCAAGAAAAGAAGACAGTGAATGGGTCGAATAG 816 0.4363 MDLLAQSCTATATNPISVSNHSFITPRKLISSRRVAPTFCSSLPQFSFTSSHPERVQPKPILKPFPSPQPQRPQPSPSPATFHKTAVVKLPARVYVGHSLYKGKAVLTVAPRPPEFTSLDSGAFKISRQGCVLLQFAPSVLPFQYDWTKKQVFSLSVGEIGILINLGAKETCEFYHDPFLGKSDEGQARKVLKVEPLHDGSGHMFNLSVVNKPENLNENIFIPVTKAEFAIFKSLFSFIMPCLLGWNAFGSSIKPEVNIASPRKEDSEWVE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2806 271 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 263 IPR009044 GO:0003677|GO:0006355
Psa2g2806 271 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 269 IPR013742 GO:0003697|GO:0006355|GO:0006952
Psa2g2806 271 Gene3D Transcriptional Coactivator Pc4; Chain A 88 263 IPR009044 GO:0003677|GO:0006355
Psa2g2806 271 Pfam Whirly transcription factor 100 235 IPR013742 GO:0003697|GO:0006355|GO:0006952
Psa2g2806 271 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 43 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2806 Psa-Chr2 325773409 325778122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2806 76 269 Whirly Transcription Factor Family AT1G14410 64.824 2.23e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Psa2g2806 Whirly 5e-54 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2806 - - lang:109355868 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2806 2 325773409 325778122 Psa2g2806 2 325773409 325778122 ECH