Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2789 ATGGAGAAATTGTACCATCTCTTCCTCTTGATCATTTTAGTGGTAATCATACCTTCATTAGTGCATGCTAATGTCAAAGAGGAACCTTCATACTGGGATAATGTATTACCATTTATTAATGATACATATTGGAAGGGAAAAGCAACAGATGCTGAAAAAGCAAACAACCTAGCTTATACACCTGACCCATACGCAGTCACCGGAAACATGGCTTCTAATGTTAGCGAGATGATAGTTGACGGCAATACAGGAAGAAGGAATCTGGTGGGGAAAAAATTAGGAAAAAATCGACCATGTTTTGCTACAAACCCCATGGACAGGTGTTGGAGGTGTGATCCTAATTGGGAAAAAAACCGCAAGAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGGAAGACTATTGGTGGAAAAGCCGGTCCTATCTATGTGGTAACTGATCCATCAGATAATGACATGCAAAATCCACTTCCAGGTACTCTTCGATATGCAGTTACAAGAAACAGACCTTTGTGGATCATCTTTGCTCATAGTATGGTGATTAGGCTCAACCAGGAACTCATAATGACAAGTGACAAGACCATTGATGGACGAGGATCTACCATTATCATTGCTAAAGGCTATGTTGTTTGGTGCAACCAAAATCCTACCATTATAAGTGAGGGTAACCGATTCATAGCCCCTAACAACCCCAATGCTAAACAGATAACAAAGAGGGATTACTCGCCGGAGTCAGTGTGGAAAAACTGGCAATGGAGATCAATCAACGATGTCTATATGAATGGAGCATTTTTTGTACAAGGAGGACCTACGTTGACTAACAGACCATTCTCAAAAAAGGACATGATCAAATCTAGGCCTGGAACTTATGTGAGAAGGCTTACTCGTTATTCTGGAAGCCTTAGATGCAGAAAGGGAAATCCTTGTTAG 927 0.4088 MEKLYHLFLLIILVVIIPSLVHANVKEEPSYWDNVLPFINDTYWKGKATDAEKANNLAYTPDPYAVTGNMASNVSEMIVDGNTGRRNLVGKKLGKNRPCFATNPMDRCWRCDPNWEKNRKKLADCVQGFGRKTIGGKAGPIYVVTDPSDNDMQNPLPGTLRYAVTRNRPLWIIFAHSMVIRLNQELIMTSDKTIDGRGSTIIIAKGYVVWCNQNPTIISEGNRFIAPNNPNAKQITKRDYSPESVWKNWQWRSINDVYMNGAFFVQGGPTLTNRPFSKKDMIKSRPGTYVRRLTRYSGSLRCRKGNPC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2789 308 SUPERFAMILY Pectin lyase-like 207 298 IPR011050 -
Psa2g2789 308 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Psa2g2789 308 PANTHER PECTATE LYASE 18-RELATED 6 207 IPR045032 GO:0030570
Psa2g2789 308 PANTHER PECTATE LYASE 18-RELATED 207 308 IPR045032 GO:0030570
Psa2g2789 308 Gene3D - 102 208 IPR012334 -
Psa2g2789 308 Gene3D - 209 301 IPR012334 -
Psa2g2789 308 PANTHER PECTATE LYASE 6 207 - -
Psa2g2789 308 PANTHER PECTATE LYASE 207 308 - -
Psa2g2789 308 SUPERFAMILY Pectin lyase-like 103 205 IPR011050 -
Psa2g2789 308 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Psa2g2789 308 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Psa2g2789 308 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2789 Psa-Chr2 323662793 323665345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2789 207 308 Polysaccharide Lyase AT1G14420 49.533 3.48e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2789 K01728 - gmx:100810857 262.307