Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2758 ATGATCATTGGCCTTGGAGCATTTGGTTCTGTTTACAAAGCACAAATGCCTACAGGTGAGACGGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGGTTCTATTACTTGGAAGATTACATCATAAAAACCTTGTGGCTTTGGTGGGATATGCTGCGGAAAGAGGGCGACATATGCTCCTTTACATTTACATGAGCAATGGCAGTTTTGCTTCTCATTTATATGGAAAAGATTATGAGCCATTAAGTTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGGGCTAATGGAATACGTAAAACTAGTTGCCATGGAAAGTGAGGGCAAGATTGGATGGGAAGGAATTGTGGATCCGAAACTGAATGAAAACTATGATGTAAACAAGCTTAATGATATGGCCTCACTTGCGTTCAAATGTGTCAGTGGAGTTTCCAAAACTAGAACTTCAATGAGGACTGCTGTTCAAGCATTATCTAAGCTTTATAAGAAGCCTAAAAGAAATCATAGCCAGACATCTTCTACTGCACAGCCGATAATCATAGGAATTATTGATCACTATGGAGATTCTGACGGCCTCGCTGTTCCGACAAGCAGCATTTGTCAAATGCAATCTCTGATGCTGTTAACCATGGGCTATGTCGCGGATGTACTCATGTGCAACATAACCTCTGCACAAGAAATTTCTGATCAAGTGGAGAGCAACTATTTTGTTGATGCCGCCGTTGTTTCTGCAAACTTCAGCATCATAGCCGAACCACCACCTGCACCTGCTGCCGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTTCAGCAATCAACATGGAAAAATAATGTCAGGAAGAATAATTTGGTTGAGCAAATCCATGGTCCACTTTCAAGCATTCAATCCTTGAGTAAAATCCTGTCTACACAAATAAAGAAAAGTCAGATTTCACATGACATTGTTGAGGATATCTTGGTGCTAGGTGATCGTTTGAGGGATGTTCTCCATCAACTTCAGGATGTTGTATATGTGACGAAGACTAATATTATGCGCCACAATGAAGAAGCAATCAAGGAAATGAATCACATGCTTGCTGAATCAGAAAAAACTCAATTGTTAGATAGTTCTCTAGTGGACAAGCTGCTTGTGGAATGCAACTTTCCATCTATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGTTATAAAGGTTTTAAGGAGGGACATACCAGGATTCTTGTAGCAACCGATTTGGTTGGCAGAGGAATTGACATTGAACGCGTGAATATTGTGACAAACTATGACATGCCTGACTATGCAGACACATACTTACACAGAGTTGGCCGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAACTACATTTGTTTCATGTTCACCCGATGTTGTCGTTCTCAATAATGTTCAGTCCCGGTTTGAGGTGGATATGAAACAGCTTCCTGAGCAGATTGATACATCTACATACATGCCACCACTTTCGTCCGGAAATCCACCTCAAGCTGCTGCTGCTGTTGCGGCAACCAGTTCGCCTAATGAAACCGCCGGCTCAATTACACAAACTGACCAAGGAAAATCTTCAAGTGAGTTTTTTTGTTTCAGCCATTGCTTTCTTACATGTTTGAGTGCTATATGGGCGATTGGGAGTGAGGGTTGA 1704 0.4155 MIIGLGAFGSVYKAQMPTGETVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVALVGYAAERGRHMLLYIYMSNGSFASHLYGKDYEPLSWDLRLSIALDVARGLMEYVKLVAMESEGKIGWEGIVDPKLNENYDVNKLNDMASLAFKCVSGVSKTRTSMRTAVQALSKLYKKPKRNHSQTSSTAQPIIIGIIDHYGDSDGLAVPTSSICQMQSLMLLTMGYVADVLMCNITSAQEISDQVESNYFVDAAVVSANFSIIAEPPPAPAAAMAYVMDQKAMLLQQSTWKNNVRKNNLVEQIHGPLSSIQSLSKILSTQIKKSQISHDIVEDILVLGDRLRDVLHQLQDVVYVTKTNIMRHNEEAIKEMNHMLAESEKTQLLDSSLVDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVTNYDMPDYADTYLHRVGRAGRFGTKGLATTFVSCSPDVVVLNNVQSRFEVDMKQLPEQIDTSTYMPPLSSGNPPQAAAAVAATSSPNETAGSITQTDQGKSSSEFFCFSHCFLTCLSAIWAIGSEG* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2758 567 Gene3D - 338 509 IPR027417 -
Psa2g2758 567 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 2 106 - -
Psa2g2758 567 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 104 190 - -
Psa2g2758 567 SMART helicmild6 383 464 IPR001650 -
Psa2g2758 567 MobiDBLite consensus disorder prediction 516 536 - -
Psa2g2758 567 Pfam Protein tyrosine and serine/threonine kinase 3 110 IPR001245 GO:0004672|GO:0006468
Psa2g2758 567 Pfam Helicase conserved C-terminal domain 379 464 IPR001650 -
Psa2g2758 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 500 IPR027417 -
Psa2g2758 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Psa2g2758 567 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Psa2g2758 567 ProSiteProfiles Protein kinase domain profile. 1 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2758 567 CDD SF2_C_DEAD 387 473 - -
Psa2g2758 567 SUPERFAMILY Protein kinase-like (PK-like) 2 107 IPR011009 -
Psa2g2758 567 SMART tyrkin_6 2 168 IPR020635 GO:0004713|GO:0006468
Psa2g2758 567 PANTHER OS01G0253100 PROTEIN 2 106 IPR045271 GO:0004714|GO:0006468
Psa2g2758 567 PANTHER OS01G0253100 PROTEIN 104 190 IPR045271 GO:0004714|GO:0006468
Psa2g2758 567 ProSitePatterns Protein kinases ATP-binding region signature. 3 25 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2758 Psa-Chr2 317978950 317982306 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2758 385 507 Eukaryotic Initiation Factors Gene Family AT5G11170 85.366 4.06e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Psa2g2758 Helicase_C 4.7e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2758 K12812 - gmx:100796232 236.113