Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2725 ATGTTGAATGTTGCTGTTGTTGGTAACAAGAGAAGGAAAAGATGTGGGAGAGTTTTCAGGTTCAAGAATTTCGGAGAACAAGGTTACCCGGTTATGTTTAATGGTTCATCGTTTCGCGAAAATGTGAATGCTTTACTTGAATATGCGAGTTTGGAGAATAATGTAAATATTGGAATGCCTATGTGGTCTTTTCAACTTGAGCTGCATCATCATCCACCTTTGCATGTTTTGTTGTTTGTGATTGAAGAATCAATTGAGGCAGCCATAAATCGCCATTGCAACCATTGTCAATATGTTGGTTGGGGCAACCATTTGATTTGCAATAAGAAGTATCATTTTCTATTACCTTCTAAGGAGGCACTAAGTAGCTGCACAAGCTGTGAAAATTGTTGTGATTCAGTTGGTACAATGAACAATGGTAAGTCAAAATTAATAGAATTAGAAGGTCATATGATGCATGGTGTGTTTCACTCTAATGGATTTGGACATTTGCTATGTGTCAATGGCTTGGAAATGGGTTCTAATTTGGGTGGCAACCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGATACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATATAGTGAGCCATGGTTTGGTCGTTGGGGATACAAGTTTGGTAGAGGATGCTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGTATGCCCCTATACTTACTTACACACCACATTGCAAATTCCAATCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGATCACTCTCTTATAACCCTTGGTGACTTATTTCACTATATATTAGAGCTCAAGTCACGACTTCCGCGTGAAACATGCATTGGTTCGTACAACACAAATGCCTTAGTCGAAACAAATTGTCGTTGGTCGCCTAAAAGGATTGAAATGGCGACGAGGGTTATCGTTGAGGCCTTAAAAAGAACGGAATTCAGATGGGTTTCGAGACAAGAAGTTAGGGATGCAGCGCGCGTTTACATAGGTGATACTGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGTAACCATGTTGTTGGAAACTATTTGGTTCGCCGGAGCTTGAATCCGGTTACTAAAGTTTTGGAGTATTGTTTAGAAGACATTTCTAATGCTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTTAAGGACAAGTACAAAATCACAAAGGGTCAACTTATGAAGGACATGATTTGTTTGTACAAGTACATACTTATTGATACAAAACCAATTATAGGGTCGGAATTTCTTTCAGCTATACCATTGGCAGCTAGAATAATTCTTGACACAAAGTATCTAATCAAAGACTATGGAGAGGTACCTTTGCAAGTTGAATTAGGATCAGAAGGAAAATTTAATCTTTATTGTACAATTTTGTTGAGGAATGTTAACAATGTAGGGCATGATCATGAGTATTATTTGAACAATGAAATATCAATGCCAATGCCACCTTATGAATGTATCACATTGAAAAGTTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGGTTAAGGGGTTTTGTAGTGGAACCAAATGAGATTTTGGTGAATGCAAAAGGGAATGAAATGGTTTTTGGAATGATTGAAGTTGGTGGAAAACTTGTTCTTGAAGGTTGGCATGGTAGTGACATGATTGAGCACATATGTGAAAGGAATCCAAATAAGGGAATTGTGGATTGCACTTGTGGAACTAAAGAAGATGATGGTGAAAGAATGGTGTCTTGTGATATTTGTGAAATTTTGCAACACACTAGATGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1983 0.3717 MLNVAVVGNKRRKRCGRVFRFKNFGEQGYPVMFNGSSFRENVNALLEYASLENNVNIGMPMWSFQLELHHHPPLHVLLFVIEESIEAAINRHCNHCQYVGWGNHLICNKKYHFLLPSKEALSSCTSCENCCDSVGTMNNGKSKLIELEGHMMHGVFHSNGFGHLLCVNGLEMGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANSNHEIPLIFSRYQTLSDHSLITLGDLFHYILELKSRLPRETCIGSYNTNALVETNCRWSPKRIEMATRVIVEALKRTEFRWVSRQEVRDAARVYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNAYPCHEGLVMSSSNKVKDKYKITKGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAARIILDTKYLIKDYGEVPLQVELGSEGKFNLYCTILLRNVNNVGHDHEYYLNNEISMPMPPYECITLKSCATINDLKLEVERNFREIYWGLRGFVVEPNEILVNAKGNEMVFGMIEVGGKLVLEGWHGSDMIEHICERNPNKGIVDCTCGTKEDDGERMVSCDICEILQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2725 660 Pfam PHD-finger 605 651 IPR019787 -
Psa2g2725 660 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 9 660 - -
Psa2g2725 660 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 660 - -
Psa2g2725 660 CDD PHD_MMD1_like 604 649 - -
Psa2g2725 660 SUPERFAMILY FYVE/PHD zinc finger 597 652 IPR011011 -
Psa2g2725 660 ProSitePatterns Zinc finger PHD-type signature. 605 649 IPR019786 -
Psa2g2725 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 653 IPR013083 -
Psa2g2725 660 SMART PHD_3 604 650 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2725 Psa-Chr2 311595916 311598619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2725 7 660 PHD Transcription Factor Family AT5G22260 50.073 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa2g2725 PHD 5.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2725 - - mtr:MTR_5g040700 1248.03