Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2707 ATGGCATCTGAAGCTGAAGTTTTCGAACATTTTTCTGTATACGACATAATAACAAGAGTTAGAGACATGGCATCTGAAGCTGAAGCTTCTGAACTTTCCTGTTTGTTTGAAAGAATGATAAGAACTAATGACATGTCTTTGTTCTTTCCATTCATGCTTCGTCTTTATGCTTTGTCAACTCGAAGAAACAGCGACGACCCAGATCAAGAATCATCCAGTAACGAAGATTCCAACCGTCAAAGAATCATCTTGGTGAGCCCTTCTACACAACGTATTATTCTAATCAACGATGTTTCAAGTCTTGAAGCTTTGTTTCAAGAACATGGAAGCACTAGAGAGAATGGTCAACATCCAGCTTCAACAAAGTCAATAGAAACAATGAAAAAAGTTGAAATTGTTGAAGGTGAAGAACATAGAGAGTGTGTTGTTTGTTTGGAAGAATTTGAGGTTGGTGAAGTTGTTAAAGAAATGCCTTGTAAGCATTGGTTTCATGGGAATTGTATTGACAAGTGGTTAAGGATTCATGGATCTTGTCCTGTTTGTAGGTATCAGATGCCTATTCATGAGGAACAAGAAAAATAA 582 0.3694 MASEAEVFEHFSVYDIITRVRDMASEAEASELSCLFERMIRTNDMSLFFPFMLRLYALSTRRNSDDPDQESSSNEDSNRQRIILVSPSTQRIILINDVSSLEALFQEHGSTRENGQHPASTKSIETMKKVEIVEGEEHRECVVCLEEFEVGEVVKEMPCKHWFHGNCIDKWLRIHGSCPVCRYQMPIHEEQEK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2707 193 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Psa2g2707 193 SMART ring_2 141 181 IPR001841 -
Psa2g2707 193 CDD RING-H2_PA-TM-RING 140 182 - -
Psa2g2707 193 PANTHER - 33 191 - -
Psa2g2707 193 Pfam Ring finger domain 140 182 IPR001841 -
Psa2g2707 193 SUPERFAMILY RING/U-box 123 187 - -
Psa2g2707 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Psa2g2707 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 33 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2707 Psa-Chr2 310942935 310943875 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2707 23 191 C3H Transcription Factor Family AT1G26800 47.159 5.30e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2707 - - lang:109356689 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2707 2 310942935 310943875 Psa2g2707 2 310942935 310943875 ECH