Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2689 ATGGCGGACTCCGACAATGCTTCTGGTGGTCCACACGGCGGCGGATCTAGCGCTCACGACAACGAGATGTCACCGAGCGAGAAAGGCAAGTTCTTTCCGATAGCGAATGTAAGCAGGATCATGAAGAAGGCACTTCCATCGAAAGCGAAGATCTCCAAGGACACAAAAAGAAACGGTTCAAGAGTGCGTTTCAGAGTTCATCAGCTTCGTCACCGACGAAGCCTCCGACAAGTGCCAACGTGA 243 0.5226 MADSDNASGGPHGGGSSAHDNEMSPSEKGKFFPIANVSRIMKKALPSKAKISKDTKRNGSRVRFRVHQLRHRRSLRQVPT* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2689 80 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 56 - -
Psa2g2689 80 MobiDBLite consensus disorder prediction 1 31 - -
Psa2g2689 80 MobiDBLite consensus disorder prediction 45 80 - -
Psa2g2689 80 SUPERFAMILY Histone-fold 17 56 IPR009072 GO:0046982
Psa2g2689 80 MobiDBLite consensus disorder prediction 47 61 - -
Psa2g2689 80 Gene3D Histone, subunit A 20 60 IPR009072 GO:0046982
Psa2g2689 80 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 56 IPR003958 -
Psa2g2689 80 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 56 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2689 Psa-Chr2 309364812 309365054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2689 1 58 CCAAT-HAP3 Transcription Factor Family AT4G14540 60.345 2.48e-15 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2689 K08065 - ncol:116259487 70.8626