Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2679 ATGGGGAGGGTGAAACTAAAGATAAAGAAGTTGGAGAACACAAATGGTCGACAATCAACCTATGCAAAAAGAAAAAACGGAATAATGAAGAAAGCCAGTGAATTATCTATATTGTGTGATATAGATATTATTCTACTCATGTTTTCTCCCGGTGGAAAACCTTCATTATGCACAGGGAGACGCAGCAACTTTGAGGAGGTGATGGCAAAGTTTACTCAACTAACCTCACAAGAAAGGGCAAAGAGAAAATTGGAGAGTCTTGAAGCACTAAAGAAAACATTTAAGAAGTTAGATCATGACGTGGTTATTCAAGACTTTTATGGTACAAGCAGTCAAACCGTTGAGGATTTGAACGATGAAGCTAAGCAATTACATAGCCGTATCTCCCAAATACACGAGCGACTAAGACATTGGAATGACATTGAGAAAATTAGTGGTGTTGATGAATTGGGACAGATGGAAAATTCACTCAAAGAGTCTCTTAATCAAATTCATACTCACAAGGAAAATGTACAAAAACAACAACTAGCATCACTTCAATGCAATAACCAGTTCAATGAATTGCATGTTCCCTATAAAATGAGTACTCAACAGCAATTTCAATCTTTTCCATGGATGGTTAACGGTGATAGTCAGAATATAGTACTTCCTGAAGAACCAAACTTGCTTCTCCACAAAGATGTAGAGGGTTCAACAAGCTCATCATTTGGAAGCTATGCAAGTTATCTTGGCTCAAGCACCAAACCAAACTTATCAAATTCAGGTCAAGAAAATTGTGTTCTTAGTGACATGAGCAATAATACTACAGCAGCTCCTGTGAGATTGCCATTCAGTGGACAGTTTTCATACATTCCAAACAATTTCAACATAATGAATGATATGAAGCTTCAACCAGCAACAACAGCGATGAATAATAATAATAATAATAATAATAATAATAATCCACATGAAAACCAAGTAGATAATTATCATGTCAATGGAAACTTTGAAGCACCTAAACAAGGGTTTGAACAATCTAACCACCATGGTTGGACTTCAAACTCAGGTCCTTGTGCTGTTAATATCTTTGATGAAAATTTGTATCCACAGCCAAATTTTCCACAAGTGCATTTTGGCTTCACATAG 1125 0.3618 MGRVKLKIKKLENTNGRQSTYAKRKNGIMKKASELSILCDIDIILLMFSPGGKPSLCTGRRSNFEEVMAKFTQLTSQERAKRKLESLEALKKTFKKLDHDVVIQDFYGTSSQTVEDLNDEAKQLHSRISQIHERLRHWNDIEKISGVDELGQMENSLKESLNQIHTHKENVQKQQLASLQCNNQFNELHVPYKMSTQQQFQSFPWMVNGDSQNIVLPEEPNLLLHKDVEGSTSSSFGSYASYLGSSTKPNLSNSGQENCVLSDMSNNTTAAPVRLPFSGQFSYIPNNFNIMNDMKLQPATTAMNNNNNNNNNNNPHENQVDNYHVNGNFEAPKQGFEQSNHHGWTSNSGPCAVNIFDENLYPQPNFPQVHFGFT* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2679 374 CDD MADS 2 54 - -
Psa2g2679 374 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 Coils Coil 77 97 - -
Psa2g2679 374 Coils Coil 150 170 - -
Psa2g2679 374 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Psa2g2679 374 Coils Coil 114 134 - -
Psa2g2679 374 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 364 - -
Psa2g2679 374 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa2g2679 374 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Psa2g2679 374 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2679 Psa-Chr2 307591773 307594758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2679 1 332 Type I MADS-box Gene Family AT2G03060 47.953 1.41e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa2g2679 SRF-TF 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2679 - - lang:109356063 498.819