Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2676 ATGGTTCCAATAAGTTTGCTCTTGGTTGGATTTCTTACTATATTTTCCTCAGCTTATGCCTATGGAGGAGGATGGATTAATGCACATGCAACCTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGGGCATGTGGATATGGTAACCTATACAGTCAAGGTTATGGAACAAACACAGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGCTTAAGCTGTGGGTCTTGTTTTGAGATAAGATGTGCTGGTGACCATAAATGGTGTCTTCCTGGTTCCATTTTGGTTACTGCCACTAATTTCTGTCCTCCAAACAATGCCTTACCTAATAATGCTGGTGGATGGTGTAACCCTCCTTTGCATCACTTTGATCTTGCTCAACCTGTTTTTCTAAGAATTGCTCAATATAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGAATTAGGTTTACAATAAATGGACATTCCTACTTCAATTTAGTCCTAGTAACAAATGTGGGTGGTGCTGGAGATGTACATTCAGTTGCTATTAAAGGTTCAAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGTCAGAATTGGCAAAGCAACAATTATCTTAATGGACAACCCTTGTCTTTTAAGGTTACAACAAGTGATGGAAAAACCATTGTTTCAAACAATGTTGCCCCTTCTGGTTGGTCCTTTGGTCAAACCTACACTGGTGCTCAATTCCACTAG 747 0.415 MVPISLLLVGFLTIFSSAYAYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQPLSFKVTTSDGKTIVSNNVAPSGWSFGQTYTGAQFH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Psa2g2676 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Psa2g2676 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Psa2g2676 248 Gene3D - 12 151 IPR036908 -
Psa2g2676 248 PANTHER EXPANSIN-A15 6 247 IPR002963 GO:0009664
Psa2g2676 248 PANTHER EXPANSIN-A10 6 247 - -
Psa2g2676 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Psa2g2676 248 Gene3D - 155 248 IPR036749 -
Psa2g2676 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Psa2g2676 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Psa2g2676 248 SUPERFAMILY Barwin-like endoglucanases 12 173 IPR036908 -
Psa2g2676 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Psa2g2676 248 SMART dpbb_1 60 145 IPR007112 -
Psa2g2676 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Psa2g2676 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2676 Psa-Chr2 307543415 307546322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2676 1 248 Expansin Gene Family AT2G03090 81.048 6.86e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2676 - - gmx:100527059 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2676 2 307543415 307546322 Psa2g2676 2 307543415 307546322 ECH
Psa2g2676 2 307543415 307546322 Psa1g1662 1 115013202 115015594 ECH