Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2647 ATGGAAACAAGAACATGCTTTGAACTTCCACCTGGCTTCAGGTTTCATCCAACTGATGAGGAGTTAATTGTTTACTATCTTTGTAATCAAGCATCTTCACAACCATGTCCTGCATCTATCATCCCTGAAGTCGATATCTATAAATTCGATCCATGGGAATTACCAGATAAATCGGAGTTTGGAGAAAATGAATGGTATTTTTTTAGTCCAAGGGAGAGAAAATATCCAAATGGGGTGAGGCCTAATAGAGCAACAGTTTCAGGTTATTGGAAAGCAACTGGAACAGACAAATCAATCTTCAGTGGATCTAAGCATATTGGAGTTAAGAAAGCTTTGGTTTTTTACAAGGGTAGGCCACCAAAAGGAATCAAAACAGATTGGATTATGCATGAGTATAGGTTAATTGGATCAAGAAAACAAACCAATAGACAAATTGGATCCATGAGGCTAGATGATTGGGTCTTATGTAGAATCTACAAGAAGAAGAACACCACAAAATCATTGGAGACAAACCATGATTACTCACCAAACCAAATGAACATGACACAAAGAAAAGATGATAATGAACAAGAATTGGTGAAATTTCCAAGGACATGTTCCCTTACTAATCTTTTGGACATGGATTACTTGGGACCAATATCACAAATATTATCAGATGGATCCTATAATTCAACTTTTGAATATCAAATGAATAGTGCAAGTGATGGAATAATTGACCCGTTTGTAAAGCCACAAATGGTTGAAATGGATACTACTAACAACCCTTATGGGGCTGATTCAGGGAAGTACCGTGGGAACCAAGTATGTGATTAG 813 0.369 METRTCFELPPGFRFHPTDEELIVYYLCNQASSQPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKSIFSGSKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLIGSRKQTNRQIGSMRLDDWVLCRIYKKKNTTKSLETNHDYSPNQMNMTQRKDDNEQELVKFPRTCSLTNLLDMDYLGPISQILSDGSYNSTFEYQMNSASDGIIDPFVKPQMVEMDTTNNPYGADSGKYRGNQVCD* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2647 270 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Psa2g2647 270 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Psa2g2647 270 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Psa2g2647 270 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Psa2g2647 270 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 5 235 - -
Psa2g2647 270 PANTHER NAC TRANSCRIPTION FACTOR 56 5 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2647 Psa-Chr2 303646617 303648531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2647 1 216 NAC Transcription Factor Family AT1G69490 67.544 1.02e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa2g2647 NAM 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2647 - - gmx:732552 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2647 2 303646617 303648531 Psa2g2647 2 303646617 303648531 ECH