Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2617 ATGGATCCAGCGCCAATAATCAACGCTGCTCCCAACACGCTGTCGTTTCACCCACCGGAGATCTGGCAGTTCCCACCCTCCACAACACCGCACTTCGACCATGCTTTCGCAGCGGAAGTTCCCGCTAGACAATTCCTAGGTCCTGACCTGACACTTCTGAACCATGGCCGGAAAAGGCGCCACACGGAGGAGGATTCTGTTAAAGGCGTTTCCACCAGCAACGACGTGAATGGTGATGATGGAAAAAGGATTAAGACATCGGGTGACAGTAAAGATGAGGAAGTAGTAGGAGAAGACATCAGTTCAGGAAAGCATGCGGAAAAAACTACGGATGAGCCACATCCTAAGCAAGATTATATTCATGTTCGAGCTAGAAGAGGTCAAGCTACTGATAGCCACAGCCTTGCTGAAAGAGCTAGAAGAGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATAAATTATATCCAATCGCTTCATCACCAAGTAGAGCTGGAAGCAGTAAATTCAAGATTGACACCTGAAATGTTTCCTCCTAAAGCTTTTGATCAGCAAACATATGACGCAACCCCCATACCATTTGCTTCACAAGCTACAAGAGAGTACAGCCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGATCGACGTAA 729 0.4636 MDPAPIINAAPNTLSFHPPEIWQFPPSTTPHFDHAFAAEVPARQFLGPDLTLLNHGRKRRHTEEDSVKGVSTSNDVNGDDGKRIKTSGDSKDEEVVGEDISSGKHAEKTTDEPHPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVELEAVNSRLTPEMFPPKAFDQQTYDATPIPFASQATREYSRGSSPEWLHMQVGGGFERST* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2617 242 Gene3D - 125 196 IPR036638 GO:0046983
Psa2g2617 242 PANTHER BNAC05G07950D PROTEIN 1 242 - -
Psa2g2617 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 184 IPR036638 GO:0046983
Psa2g2617 242 MobiDBLite consensus disorder prediction 78 118 - -
Psa2g2617 242 SMART finulus 134 184 IPR011598 GO:0046983
Psa2g2617 242 Pfam Helix-loop-helix DNA-binding domain 132 178 IPR011598 GO:0046983
Psa2g2617 242 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 242 IPR024097 GO:0006355
Psa2g2617 242 MobiDBLite consensus disorder prediction 56 118 - -
Psa2g2617 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2617 Psa-Chr2 301845324 301848760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2617 1 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 49.145 1.86e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g2617 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2617 - - gmx:100782014 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2617 2 301845324 301848760 Psa2g2617 2 301845324 301848760 ECH
Psa2g2617 2 301845324 301848760 Psa4g3101 4 254068136 254071666 PCT