Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2602 ATGATAAGCAGAGAGACTCTGGAAGTGTATACGAAATATGCCATAGAGTTTCTGCTAGATGTAAAGGGTAGATTAGGTGAAGATAAGTTTGATGAGTTTGTAAAATTCTTACTGGCTTATGTTGCAAAAAGCATTGAGGTTACCGATTTCATAGTAAAAGTGAAGGAAATATTTGAAGGTGATACAGATTTGTTATTGAGATTTAACATTTTCATACCAAGAGAATATGAAATTAAGCTTCCATTGGAGGGTGAACAATCTCAACCAAAGAAGCCTGTCACAATGGAAGATGCCATAAGATTTTTGCATAAGATAAAGGCTCAATTAGGAGTTGATAATCATGCTTACAAATCATTTATGAGCATATTAACTACGTATCATAACAAACAGAAGTCTTTCACTATGGTCTGCCAAGAGGTTATTACACTATTGCAAGGTCATCCTGAACTTCTTAATGAATTTTATGATTTTCTTCCAAAAGCTGTTTCTGCTCATTATATTGGTGCTCGGAATTGTGCGCGTGGAGATATATAG 534 0.3446 MISRETLEVYTKYAIEFLLDVKGRLGEDKFDEFVKFLLAYVAKSIEVTDFIVKVKEIFEGDTDLLLRFNIFIPREYEIKLPLEGEQSQPKKPVTMEDAIRFLHKIKAQLGVDNHAYKSFMSILTTYHNKQKSFTMVCQEVITLLQGHPELLNEFYDFLPKAVSAHYIGARNCARGDI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2602 177 SUPERFAMILY PAH2 domain 88 160 IPR036600 GO:0006355
Psa2g2602 177 ProSiteProfiles PAH domain profile. 7 75 IPR003822 GO:0006355
Psa2g2602 177 ProSiteProfiles PAH domain profile. 91 161 IPR003822 GO:0006355
Psa2g2602 177 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Psa2g2602 177 Gene3D Paired amphipathic helix 14 73 IPR036600 GO:0006355
Psa2g2602 177 Pfam Paired amphipathic helix repeat 115 158 IPR003822 GO:0006355
Psa2g2602 177 Gene3D Paired amphipathic helix 90 162 IPR036600 GO:0006355
Psa2g2602 177 PANTHER SIN3B-RELATED 11 161 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2602 Psa-Chr2 300009039 300010492 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2602 9 80 WRKY Transcription Factor Family AT4G12020 31.507 9.87e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g2602 PAH 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2602 K11644 - lja:Lj0g3v0300059.1 139.813