Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2599 ATGAAGCGGTCACGAGAGGAGGGTTTCATGACTTCTTCTTCTCAGCTTAAGCGACCTATGTTATCTTCTAGAGGAGAAGCGTCTGGGCAACCCCTGATGATTAATGGAGGTGGTCAAAAACTGACTACTAATGATGCCTTATCGTATCTCAAGGCGGTGAAAGATATTTTTCAAGATAAGAGGGATAAATATGAAGACTTTTTGGAGGTTATGAAAGATTTTAAAGCACAAAGAATTGATACTGCTGGTGTCATTGCAAGAGTGAAGGATCTTTTTAGAGGTCATAGAGATTTAATATTGGGATTTAACACCTTTTTGCCAAAGGGGTATGAAATCACCCTTCCGATCGAGGATGATCAACCTCACTCAAAAAAGCCTGTTGAATTTGAAGAAGCTATGAGTTTTGTGAACAAGATAAAGACTCGGTTTCATGGTGATGATCATGTTTACAAGTCATTTCTAGACATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCACTCTTCCAAGACCACCCGGATCTTCTTGATGGGTTTATTCATTTTCTTCCCGATGTTTCCGCAGCTGCCTCTGCTCATACTGTTGCTCGAAATTCTGTGTTTCGAGATAGGAGCTCTGCAATGCCAACAGTGCGGCAAGTGCATGTTGAAAAGAGAGAAAGGATCGTTGTTTCACATGGTGACCGTGACACCAGTGTTGACCGTCCTGACCCAGATCTTGACGGAAATTTGTTGAGGGCAGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAAAAGGACCGTAGAGAAGATAGAGACAAGAGAAAACGGGAACGAAATGATAGAGATGAACAGGGAAGGGGTCGAGACAGGGAGCGGTTATCCCAAAAACAGAAAATTGATCATATGGCTGAAGACTCAGGAGCTGAACCATTGCTTGATGCAGATCAAAATTTTGGTGTGTATAGTCAAGAGTTAGCTTTCTGTGATAAAGTCAAAGAGAGATTACTAAATCCTGACAGCTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCCGGGAAATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATGGAAGGGTTTAATGAATTTTTGCTACAAGCTGAGAAGAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAGAGACATGGACTGAAACCAATGAAGGCTGGACAGAGAGATAGGGATCATGATAAAGATCGTTACAGGGATGATAGTATGAAAGAAAGGGACCGTGAATTCCGAGAAAGGGACAAATCTTCTATGATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTCTGTATCCCAGCAAGGATAAGTATCTCTCTAAACCAATAAATGAGCTGGACCTTTCCAACTGTGAACGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCATAGAACAGAAATTGGCGCGGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAATATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTCGAGCTTGATATGTTGTTAGAATCTGTAAATGTGACAACTAAACGAGTACAAGAATTGTTAGAAAAGATCAACAAAAATCTACTTAAAGGAGACAGCCCAATTCGTATTGAGGAACACTTAACAGCTCTAAACTTTAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGTGTTGGAAGTGCTAAAGAAGAATGCATCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGAGCCGATTTCAGTAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACCAAAAGCTTGAGCACCAAAGCCTTACTGTCCGAAATCAAAGAAATCAGTGAGAAGAAACACAAAGACGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGACCTATTCTTCCAAACCTGGAGTTTGAGTATCTTGATCCAGACATCCATGAAGACTTGTATCAGCTTATAAAGTATTCATGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTACCTTGTCGGCCCCAGGGGGCTGAGGATACTGAAGATGCCGTGGCTAAGAATAATTCTGGAAGTAATGTTGCTGAAAGTGATGGTAGTCCTGGTGTTGGTGCCACCATAATGAGCCCAAAGCATATAAATACTTCTAGAAATGGTGTTGACTGTGTGCCGTTAGATCAGTCAACTTCTAGAAAAGCATGGCAGTCAAATGGTGATACTGGGGTTAGAGAAGATAAATGTCTTGATTCAGACCGTACTGTGCGTGAAAGTGAAGCTTTTTGCAATAATCTGCAAAACGGTAAACCGGATATAATTGCATCCGTGCATAATGAGCTATCAGGAGTCAATAAGCAAGATCTCTCTGGTGAGCAGTTACTGAATGATAATGTCTCATCAGCATCTGGAATGGAGCTAAGTAATAAAAGAATAAAGATAGATAATGCATCAGGACTTGCTGCAACTCCATCTAGAAATGATAATGTGTCTGTCACGGCTGAACATGAATTACCTTCATCACAGGGTGGTGATTCTGCCAGAGCAGGTACTTCCACAAATGTGGCCATTGCTGGAGGCACTGATGTTTGCAGATATCAAGAGGAATCAAATCGACAGTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAATTCTGCAGTTTATGGAGATGCTGGTTTGGATGCAGTGCATAAAGAAAAGGATGGTGTGAATCGGAAATACCAAAATAGGCCTGAGGAAGAAGTTCGTGGTGAAGCCAGACGAGAAAATTATGTGGATGCTGATGATGAAGGCGAAGAAAGTCCTCAGAGGTCCTCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTGTCTGGAAGCGAATCTGCTGACGGCGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGAGAAAATGATAGTAAGGCTGAAAGTGAAGGTGAAGCTGAAGTTGTGGCTGATGTGCATGATGTTGAAGGAGATGGAATGTCATTAACATTTTCTGAACGCTTTCTTCTAAATGTGAAACCATTGACAAAGCATGTTCCCTCAGTGTTACATGTGAAAGACAGGAATTCTCAAGTTTTTTATGGAAATGACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGAATACAATCAGCAAAGGTTAACTCATCATCAGCTGAAAGGAAATGGAGAGCTTCAAACGATGCAAGCTCTACTAATCAATATGACAGGTTCATGAATGCGCTTTACAGTTTGCTGGATGGTTCTTCTGACAATACTAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAGGCTGTTGCGAGCGATGAGATGGATAATAAGCTTCTTCAACTACATGCATATGAGAAATCAAGAAAACTTGGAAAGTTTTTCGATATAGTTTATCACGAAAATGCTCGCTTTCTTCTTCATGATGAGAACATATATCGTATTGAATTTTCACCAAAACCAAAGACACTATCTATTCAACTTATGGACTGTGGAAATGTTAAGCATGAAGTGACTGCTGTGTCAGTGGACCCAAATTTTTCAGCCTATCTGCATAATAAATTCCTCTCCATTGTCCCGGACCAAAAGACATCAGGGATTTTCATGAAAAGGAATAAACGTGGATATGCCGGTAATGATGAGTTGTCAAGCCAGGTTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTAGCAATTCTTCTAAGGTGTCGTATGTTTTAGATACAGAAGACTTCATGTTCCGGATGAGAAGCAAAAGAAAAGCTTTGCGTCTGAAGGGGTCATGCCATGAACAAGAGAAGTCTTCAAACATTCGTTCAAGCAGAGCAGCAAGGTTCCGCAATCTGTTTTCCTTCACATGA 4206 0.4047 MKRSREEGFMTSSSQLKRPMLSSRGEASGQPLMINGGGQKLTTNDALSYLKAVKDIFQDKRDKYEDFLEVMKDFKAQRIDTAGVIARVKDLFRGHRDLILGFNTFLPKGYEITLPIEDDQPHSKKPVEFEEAMSFVNKIKTRFHGDDHVYKSFLDILNMYRKENKSIDAVYQEVAALFQDHPDLLDGFIHFLPDVSAAASAHTVARNSVFRDRSSAMPTVRQVHVEKRERIVVSHGDRDTSVDRPDPDLDGNLLRAEKEHKRRVEKEKDRREDRDKRKRERNDRDEQGRGRDRERLSQKQKIDHMAEDSGAEPLLDADQNFGVYSQELAFCDKVKERLLNPDSYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQAEKNDGGFLAGVMNKRHGLKPMKAGQRDRDHDKDRYRDDSMKERDREFRERDKSSMISNKDVSGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASHRTEIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVQELLEKINKNLLKGDSPIRIEEHLTALNFRCIERIYGDHGLDVLEVLKKNASLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEKKHKDDDVLLAIAAGNRRPILPNLEFEYLDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPMLCVPCRPQGAEDTEDAVAKNNSGSNVAESDGSPGVGATIMSPKHINTSRNGVDCVPLDQSTSRKAWQSNGDTGVREDKCLDSDRTVRESEAFCNNLQNGKPDIIASVHNELSGVNKQDLSGEQLLNDNVSSASGMELSNKRIKIDNASGLAATPSRNDNVSVTAEHELPSSQGGDSARAGTSTNVAIAGGTDVCRYQEESNRQFKSEREEGELSPNGDFEEDNSAVYGDAGLDAVHKEKDGVNRKYQNRPEEEVRGEARRENYVDADDEGEESPQRSSEDSENASENVDVSGSESADGEECSREEHEDGENDSKAESEGEAEVVADVHDVEGDGMSLTFSERFLLNVKPLTKHVPSVLHVKDRNSQVFYGNDSFYVLIRLHQTLYERIQSAKVNSSSAERKWRASNDASSTNQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEMDNKLLQLHAYEKSRKLGKFFDIVYHENARFLLHDENIYRIEFSPKPKTLSIQLMDCGNVKHEVTAVSVDPNFSAYLHNKFLSIVPDQKTSGIFMKRNKRGYAGNDELSSQVMEGLQIINGLECKIASNSSKVSYVLDTEDFMFRMRSKRKALRLKGSCHEQEKSSNIRSSRAARFRNLFSFT* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2599 1401 MobiDBLite consensus disorder prediction 227 313 - -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 763 779 - -
Psa2g2599 1401 Pfam Sin3 family co-repressor 478 568 IPR013194 -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 947 961 - -
Psa2g2599 1401 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Psa2g2599 1401 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Psa2g2599 1401 MobiDBLite consensus disorder prediction 407 452 - -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 409 445 - -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 1 26 - -
Psa2g2599 1401 SMART hdac_interact2seq4b 476 576 IPR013194 -
Psa2g2599 1401 SUPERFAMILY PAH2 domain 324 386 IPR036600 GO:0006355
Psa2g2599 1401 ProSiteProfiles PAH domain profile. 317 389 IPR003822 GO:0006355
Psa2g2599 1401 Coils Coil 254 274 - -
Psa2g2599 1401 Pfam Paired amphipathic helix repeat 342 386 IPR003822 GO:0006355
Psa2g2599 1401 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Psa2g2599 1401 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355
Psa2g2599 1401 MobiDBLite consensus disorder prediction 1044 1069 - -
Psa2g2599 1401 Gene3D Paired amphipathic helix 321 390 IPR036600 GO:0006355
Psa2g2599 1401 SUPERFAMILY PAH2 domain 39 108 IPR036600 GO:0006355
Psa2g2599 1401 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Psa2g2599 1401 MobiDBLite consensus disorder prediction 898 928 - -
Psa2g2599 1401 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 11 1377 - -
Psa2g2599 1401 Pfam C-terminal domain of Sin3a protein 1116 1361 IPR031693 -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 947 1069 - -
Psa2g2599 1401 SUPERFAMILY PAH2 domain 123 194 IPR036600 GO:0006355
Psa2g2599 1401 MobiDBLite consensus disorder prediction 896 928 - -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 980 1031 - -
Psa2g2599 1401 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Psa2g2599 1401 MobiDBLite consensus disorder prediction 761 782 - -
Psa2g2599 1401 MobiDBLite consensus disorder prediction 227 311 - -
Psa2g2599 1401 PANTHER SIN3B-RELATED 11 1377 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2599 Psa-Chr2 299727411 299742392 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2599 30 121 WRKY Transcription Factor Family AT4G12020 61.702 3.33e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g2599 Sin3a_C 6.6e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2599 K11644 - gmx:100811928 2084.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2599 2 299727411 299742392 Psa2g2599 2 299727411 299742392 ECH