Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2583 ATGAGCAAGGGATCGCATTCAAAAGAAGAGGCAACAAGTGATAACGCCAAGATTTATGTCAAAGAAATAAAGGCTGCGTTTAAAGATGAGAAGCACAAGTTCAACGAGTTTTTAAAAGCTATGAAAGATTTCAAGAAAAAAAGAATTAGCGTAGCACGTATGCTTACAAGAGTGAAGAAATTGTTTGAAGGGCATCGAGAATTGTTATTGAAATTCAATACATATTTGCCAGAGGAATTTGAGATTACACCTCCATCAGAGAAGCCACTAGTGGATATAGAATATGCTAGAAAATATTTGGACAAGGTGAAGACTCGATTTCAAGATGATCCTGACGTTTACCAATCGTTTGTAGCTATACTGATTATGTATAGACACAAAAGAAAAGAGTAG 393 0.3537 MSKGSHSKEEATSDNAKIYVKEIKAAFKDEKHKFNEFLKAMKDFKKKRISVARMLTRVKKLFEGHRELLLKFNTYLPEEFEITPPSEKPLVDIEYARKYLDKVKTRFQDDPDVYQSFVAILIMYRHKRKE* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2583 130 Gene3D Paired amphipathic helix 88 130 IPR036600 GO:0006355
Psa2g2583 130 SUPERFAMILY PAH2 domain 8 78 IPR036600 GO:0006355
Psa2g2583 130 SUPERFAMILY PAH2 domain 88 127 IPR036600 GO:0006355
Psa2g2583 130 Pfam Paired amphipathic helix repeat 33 76 IPR003822 GO:0006355
Psa2g2583 130 PANTHER SIN3A, ISOFORM G 5 129 - -
Psa2g2583 130 Gene3D Paired amphipathic helix 15 77 IPR036600 GO:0006355
Psa2g2583 130 PANTHER SIN3B-RELATED 5 129 IPR039774 GO:0003714
Psa2g2583 130 ProSiteProfiles PAH domain profile. 8 79 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2583 Psa-Chr2 297012821 297015998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2583 12 108 WRKY Transcription Factor Family AT4G12020 35.354 1.10e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g2583 PAH 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2583 K11644 - thj:104808829 125.946