Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g2579 | ATGAGCAAGGGATCAAGTTCAAAGAAAGTAGAAGTAACAAGCGATGACGCCAAAATTTATATCAAAGAAATAAAGGATGCGTTTAAAGATGAGAAACATAAGTTCAATGAGTTTTTAAAGACTATGAAAGATATCAAGAAAAAAAGAGCTGATATAGTGTGTATGCTGGCAAGAGTGAAGGAATTGTTTGAAGGGCATGAAGAATTGTTATTGAAATTTAATACCTATTTGGTAGATGAATTTGAGATTACACCTCCACCAAATAAGCCAGAAGTGAATATAGAATATGCTAGGAAATATTTGGACAAGGTGAAGACTCGATTTCAAGATGATCCGGACATTTACCAATCATTTCTAGCTATACTGAATATGTATAGAAATAAAGAAAAGAGTTGCGAGGAGGTTTCACGAATGGTCATTTCACTTTTTAAAGACCAGCATGATCTTGTTGATGGATTTATTGAGTTTTTTCCATGA | 477 | 0.3312 | MSKGSSSKKVEVTSDDAKIYIKEIKDAFKDEKHKFNEFLKTMKDIKKKRADIVCMLARVKELFEGHEELLLKFNTYLVDEFEITPPPNKPEVNIEYARKYLDKVKTRFQDDPDIYQSFLAILNMYRNKEKSCEEVSRMVISLFKDQHDLVDGFIEFFP* | 159 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g2579 | 158 | PANTHER | SIN3B-RELATED | 4 | 158 | IPR039774 | GO:0003714 | |
Psa2g2579 | 158 | Gene3D | Paired amphipathic helix | 16 | 77 | IPR036600 | GO:0006355 | |
Psa2g2579 | 158 | ProSiteProfiles | PAH domain profile. | 10 | 80 | IPR003822 | GO:0006355 | |
Psa2g2579 | 158 | Pfam | Paired amphipathic helix repeat | 113 | 157 | IPR003822 | GO:0006355 | |
Psa2g2579 | 158 | Pfam | Paired amphipathic helix repeat | 34 | 77 | IPR003822 | GO:0006355 | |
Psa2g2579 | 158 | ProSiteProfiles | PAH domain profile. | 90 | 158 | IPR003822 | GO:0006355 | |
Psa2g2579 | 158 | Gene3D | Paired amphipathic helix | 89 | 158 | IPR036600 | GO:0006355 | |
Psa2g2579 | 158 | SUPERFAMILY | PAH2 domain | 7 | 77 | IPR036600 | GO:0006355 | |
Psa2g2579 | 158 | SUPERFAMILY | PAH2 domain | 86 | 158 | IPR036600 | GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g2579 | Psa-Chr2 | 296613594 | 296620314 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g2579 | 12 | 129 | WRKY Transcription Factor Family | AT4G12020 | 37.288 | 1.97e-17 | 76.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Psa2g2579 | PAH | 6.5e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g2579 | K11644 | - | mtr:MTR_7g013410 | 162.155 |