Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2579 ATGAGCAAGGGATCAAGTTCAAAGAAAGTAGAAGTAACAAGCGATGACGCCAAAATTTATATCAAAGAAATAAAGGATGCGTTTAAAGATGAGAAACATAAGTTCAATGAGTTTTTAAAGACTATGAAAGATATCAAGAAAAAAAGAGCTGATATAGTGTGTATGCTGGCAAGAGTGAAGGAATTGTTTGAAGGGCATGAAGAATTGTTATTGAAATTTAATACCTATTTGGTAGATGAATTTGAGATTACACCTCCACCAAATAAGCCAGAAGTGAATATAGAATATGCTAGGAAATATTTGGACAAGGTGAAGACTCGATTTCAAGATGATCCGGACATTTACCAATCATTTCTAGCTATACTGAATATGTATAGAAATAAAGAAAAGAGTTGCGAGGAGGTTTCACGAATGGTCATTTCACTTTTTAAAGACCAGCATGATCTTGTTGATGGATTTATTGAGTTTTTTCCATGA 477 0.3312 MSKGSSSKKVEVTSDDAKIYIKEIKDAFKDEKHKFNEFLKTMKDIKKKRADIVCMLARVKELFEGHEELLLKFNTYLVDEFEITPPPNKPEVNIEYARKYLDKVKTRFQDDPDIYQSFLAILNMYRNKEKSCEEVSRMVISLFKDQHDLVDGFIEFFP* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2579 158 PANTHER SIN3B-RELATED 4 158 IPR039774 GO:0003714
Psa2g2579 158 Gene3D Paired amphipathic helix 16 77 IPR036600 GO:0006355
Psa2g2579 158 ProSiteProfiles PAH domain profile. 10 80 IPR003822 GO:0006355
Psa2g2579 158 Pfam Paired amphipathic helix repeat 113 157 IPR003822 GO:0006355
Psa2g2579 158 Pfam Paired amphipathic helix repeat 34 77 IPR003822 GO:0006355
Psa2g2579 158 ProSiteProfiles PAH domain profile. 90 158 IPR003822 GO:0006355
Psa2g2579 158 Gene3D Paired amphipathic helix 89 158 IPR036600 GO:0006355
Psa2g2579 158 SUPERFAMILY PAH2 domain 7 77 IPR036600 GO:0006355
Psa2g2579 158 SUPERFAMILY PAH2 domain 86 158 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2579 Psa-Chr2 296613594 296620314 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2579 12 129 WRKY Transcription Factor Family AT4G12020 37.288 1.97e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g2579 PAH 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2579 K11644 - mtr:MTR_7g013410 162.155