Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2568 ATGAATAATTCGAGGTCTGACCTAGGGAGATCCCAGATGATAAACCGACGTACTATGGATCAGTGTACTAAAAACGCCATAGAATTTGTAAAAGAAATAAAGGGTGGATTAATTCAAAATAAGTTTGATGAGTTTGTGAAAGCCTTCAAGGATTATAGGGCACAAAGGATTGAGGATTCTGATCTTAGGGATAAAATGAAGGAAATATTCGAAGGTGAGAGAGATATGATATTGAGATTAAACACGTTCTTGCCAATTGGATATGAAATCAAACTTCCATTTGAAGATGAACAATCTCAGAGAAAAAAGCATGTCAAAATGGAAGATGCCATAAGATTTTTGAATAAGATAAAGGCTCAATTTGAAGGAGTTGATAATCATACTTACAAATCATTTATGAAGATATTAATTATGTTTTATAAGAAACATAAGTCTTTCACTATGGTCTGCCAAGAGGTTACTACACTATTGCAAGGCCATCCTGATCTTCTTGATGAATTTTATTATTTTCTTCCAAAATCTATTTCTGCTCATTATGTTGCTGCTCGGAATTCTGTGCGTGGAGATATGTAG 573 0.3368 MNNSRSDLGRSQMINRRTMDQCTKNAIEFVKEIKGGLIQNKFDEFVKAFKDYRAQRIEDSDLRDKMKEIFEGERDMILRLNTFLPIGYEIKLPFEDEQSQRKKHVKMEDAIRFLNKIKAQFEGVDNHTYKSFMKILIMFYKKHKSFTMVCQEVTTLLQGHPDLLDEFYYFLPKSISAHYVAARNSVRGDM* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2568 190 PANTHER SIN3A, ISOFORM G 15 178 - -
Psa2g2568 190 Gene3D Paired amphipathic helix 101 174 IPR036600 GO:0006355
Psa2g2568 190 Pfam Paired amphipathic helix repeat 127 171 IPR003822 GO:0006355
Psa2g2568 190 PANTHER SIN3B-RELATED 15 178 IPR039774 GO:0003714
Psa2g2568 190 ProSiteProfiles PAH domain profile. 16 87 IPR003822 GO:0006355
Psa2g2568 190 SUPERFAMILY PAH2 domain 23 85 IPR036600 GO:0006355
Psa2g2568 190 ProSiteProfiles PAH domain profile. 101 174 IPR003822 GO:0006355
Psa2g2568 190 Gene3D Paired amphipathic helix 25 85 IPR036600 GO:0006355
Psa2g2568 190 SUPERFAMILY PAH2 domain 102 173 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2568 Psa-Chr2 294761533 294762832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2568 23 122 WRKY Transcription Factor Family AT4G12020 26.733 4.30e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa2g2568 PAH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2568 K11644 - gmx:100811928 170.244