Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2542 ATGCAGATACTGTGTCCTGAACCCTATCCGGGGAGAATTTGGAGTTTCTTAAATCACAGAATATCGTCTATTTCAATTTGGAATGAGGGGAAACGGAATTTCTTACCTATTCTCAGTGATTCTATTATGGAGGCTTTGAAAATTTTACTTGATGTGAGAAATCACCCTGTTTTGATTCATTGCAAACGAGGAAAGCATAGAACAGGTTGTGTAGTTGGTTGCTTCAGAAAGATGTAG 237 0.3797 MQILCPEPYPGRIWSFLNHRISSISIWNEGKRNFLPILSDSIMEALKILLDVRNHPVLIHCKRGKHRTGCVVGCFRKM* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2542 78 ProSitePatterns Tyrosine specific protein phosphatases active site. 59 69 IPR016130 GO:0016311|GO:0016791
Psa2g2542 78 PRINTS Plant and fungal dual specificity phosphatase signature 3 16 IPR020428 GO:0016791
Psa2g2542 78 PRINTS Plant and fungal dual specificity phosphatase signature 37 51 IPR020428 GO:0016791
Psa2g2542 78 Gene3D Protein tyrosine phosphatase superfamily 2 78 IPR029021 -
Psa2g2542 78 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 77 - -
Psa2g2542 78 PANTHER OS06G0208700 PROTEIN 4 77 - -
Psa2g2542 78 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 77 IPR029021 -
Psa2g2542 78 Pfam Tyrosine phosphatase family 3 78 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2542 Psa-Chr2 292603023 292603878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2542 4 78 Protein tyrosine phosphatase (PTP) family AT3G02800 55.844 2.82e-24 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2542 K18045 - gmx:100785746 98.9821